Cytoscape is built with a number of open source 3rd party Java libraries. The Cytoscape team gratefully acknowledges the following libraries:
The Colt Distribution: Open Source Libraries for High Performance Scientific and Technical Computing in Java. Information is available at: http://hoschek.home.cern.ch/hoschek/colt/.
Graph INterface librarY a.k.a. GINY. Information is available at: http://csbi.sourceforge.net/.
JDOM. Information is available at: http://www.jdom.org.
JUnit. Information is available at: http://junit.org.
JGoodies Looks. Information is available at: http://www.jgoodies.com/freeware/looks/index.html.
Piccolo. Information is available at: http://www.cs.umd.edu/hcil/jazz/.
Type-Specific Collections Library, from Sosnoski Software Solutions, Inc. Information is available at: http://www.sosnoski.com/opensrc/tclib/.
Xerces Java XML parser. Information is available at: http://xml.apache.org/xerces-j/.
CLI command line parser. Information is available at: http://jakarta.apache.org/commons/cli/.
FreeHEP library. Information is available at: http://java.freehep.org.
This product includes software developed by the Apache Software Foundation (http://www.apache.org/).
This product includes software developed by the JDOM Project (http://www.jdom.org/).
One-step Installation of the Cytoscape software is accomplished using the InstallAnywhere product from ZeroG Software, Inc. (http://zerog.com)