Edge Type
|
Color
|
COMPONENT_IN_SAME
|
|
Edge is drawn if the first entity is a component of the second entity, which is a complex.
This interaction is transient in the sense that A COMPONENT_OF B and B COMPONENT_OF
C implies A COMPONENT_OF C. This interaction is undirected.
|
COMPONENT_OF
|
|
Edge is drawn if two entities belong to at least one molecular complex.
This does not necessarily mean they interact directly. In a complex with n molecules, this rule
will create a clique composed of n(n-1)/2 interactions. This
interaction is directed.
|
CO_CONTROL_DEPENDENT_ANTI
|
|
Edge is drawn if the first and second entities have control over
the same process, their control is dependent, i.e. one of them have effect over control
of the other one, and their effect is in different directions (one of them activates,
the other inhibits. This interaction is undirected."
|
CO_CONTROL_DEPENDENT_SIMILAR
|
|
Edge is drawn if the first and second entities have control over the
same process, their control is dependent, i.e. one of them have effect over control of
the other one, and their effect is in the same direction (both activates or both inhibits).
This interaction is undirected.
|
CO_CONTROL_INDEPENDENT_ANTI
|
|
Edge is drawn if the first and second entities have control over the
same process, their control is independent, i.e. they act without affecting each
other's activity, and their effect is in different directions (one of them activates,
the other inhibits. This interaction is undirected.
|
CO_CONTROL_INDEPENDENT_SIMILAR
|
|
Edge is drawn if the first and second entities have control over
the same process, their control is independent, i.e. they act without affecting each
other's activity, and their effect is in the same direction (both activates or both inhibits).
This interaction is undirected.
|
CONTROLS_METABOLIC_CHANGE
|
|
Edge is drawn if the first entity catalyses a reaction that either
consumes or produces the second entity. More specifically, this rule
will find an interaction between two entities A and B if and only
if A controls a conversion which B participates and appears only on
the left or right side of the conversion but not both. This interaction is directed.
|
CONTROLS_STATE_CHANGE
|
|
Edge is drawn if the first entity catalyses a reaction that either
consumes or produces the second entity. More specifically, this rule
will find an interaction between two entities A and B if and only
if A controls a conversion which B participates and appears both on
the left or right side of the conversion. This interaction is directed.
|
PARTICIPATES_CONVERSION
|
|
Edge is drawn if both A and B participates in a conversion as
substrates or products. Controllers are not included. This interaction is
undirected.
|
PARTICIPATES_INTERACTION
|
|
Edge is drawn if both A and B participates in an interaction as
participants. Controllers are not included. This interaction is undirected.
|
SEQUENTIAL_CATALYSIS
|
|
Edge is drawn if A and B catalyzes two conversions that are connected
via a common molecule, and where potentially that common substrate
is produced by the former and consumed by the latter.
This interaction is directed.
|