Supplemental Results
Yeang CH*, Mak HC*, McCuine S, Workman C, Jaakola T, Ideker TI
Genome Biology (2005) 6:R62   [fulltext] [PDF]


 Computer Science and Artificial Intelligence Laboratory /
    Laboratory for Integrative Network Biology
MIT / UC San Diego
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Methods
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 ·  Knockout Data Reproducibility
·  Regulated Gene Selection
 ·  Building Physical Network Models
·  Protein-DNA Data
·  Protein-Protein Data
·  Knockout Data
 ·  Model Inference
 ·  Software Download
 ·  Evaluating for New Experiments
Data
 ·  Inferred Network Models
 ·  Download Network Model Data
 ·  References

View The Inferred Network Models

In the course of this study, we were able to construct 38 network models and their inferred functional annotations, listed here. The graph semantics are identical to Fig. 3 in the paper, and a legend is also provided below. Notice that only the annotations of model #0 are uniquely inferred from the data; the annotations shown in other models are one of the multiple settings which optimally fit the data.

Cytoscape SIF files for the networks may also be downloaded individually. Click on each network to see it full-scale. All graph and annotation files used to visualize these networks are available in the complete data set available on the Download page.


Models
Page  1 | 2 | 3 | 4 | 5



Legend for Networks
Legend
Model 0 (Download SIF)
Model #0


Model 1 (Download SIF)
Model #1
Model 2 (Download SIF)
Model #2


Model 3 (Download SIF)
Model #3
Model 4 (Download SIF)
Model #4


Model 5 (Download SIF)
Model #5
Model 6 (Download SIF)
Model #6


Model 7 (Download SIF)
Model #7
Model 8 (Download SIF)
Model #8