Cytoscape 2.x Plugins Release Note

Plugin Name: GeneMANIA

Version: 3.0

Release Note:

We are pleased to announce the release of version 3.0 of the GeneMANIA Cytoscape plugin and command line tools for really fast gene function prediction. Extend and analyze your gene lists using our database of over 292 million interactions spanning 1,400 networks. You can also perform predictions on your own data by importing networks and expression profiles.

This release introduces the ability to query gene attributes; in particular, protein domains. This is also the first version of the plugin that is compatible with the newly-released Cytoscape 3.0 beta.

Cytoscape 2.X users can install the new version through the plugin manager. Cytoscape 3.0 users can use the app manager or the App Store website[1] to install GeneMANIA.

Documentation for the command line tools can be found here[2].

Compatibility:

This release works with Cytoscape 2.6.3+, 2.7, 2.8+ and 3.0 beta. Sessions created by version 1.0 of the GeneMANIA plugin cannot be loaded fully by 3.0.

[1] http://apps.cytoscape.org/apps/genemania
[2] http://pages.genemania.org/tools/