Cytoscape 2.x Plugins Release Note

Plugin Name: GeneMANIA

Version: 3.1

Release Note:

We are pleased to announce the release of version 3.1 of the GeneMANIA Cytoscape plugin and command line tools for really fast gene function prediction. Extend and analyze your gene lists using our database of over 292 million interactions spanning 1,400 networks. You can also perform predictions on your own data by importing networks and expression profiles.

This release is a minor update to 3.0. It fixes an issue where the plugin uses beta data sets instead of those that are officially released.

Cytoscape 2.X users can install the new version through the plugin manager. Cytoscape 3.0 users can use the app manager or the App Store website[1] to install GeneMANIA.

Documentation for the command line tools can be found here[2].

Compatibility:

This release works with Cytoscape 2.6.3+, 2.7, 2.8+ and 3.0 beta. Sessions created by version 1.0 of the GeneMANIA plugin cannot be loaded fully by 3.0.

[1] http://apps.cytoscape.org/apps/genemania
[2] http://pages.genemania.org/tools/