Since the release of Cytoscape 2.5 (July 2007), there are 103408 users (distinct IP addresses) downloaded plugins from this site. Total download count is 769158.

 

Plugin Name
version
Total download

Total downlaod

last 30 days

3DScape
0.4
0
 
0.2
0
3DScapeCS
0.6
1847
addParentNeighbors
1.0
1847
AdvancedNetworkMerge
1.12
2212
 
1.10
1864
 
1.05
714
 
1.04
445
AgilentLiteratureSearch
2.78
4370
 
2.77
16093
 
2.76
5827
 
2.71
4826
 
2.70
7697
 
2.69
1472
 
2.68
2807
 
2.55
8616
 
2.54
382
AllegroLayout
1.1
779
 
1.0
169
AllegroMCODE
2.1
1851
 
2.0
417
 
1.0
4225
AlternativeTableImport
1.3
560
 
1.2
294
 
1.1
264
 
1.0
286
APCluster
2.1
2017
APID2NET
1.52
6237
 
1.51
1781
 
1.5
2123
batchTool
1.0
1619
 
0.5
1230
BiNAT
1.0
0
BiNGO
2.44
23758
 
2.42
3731
 
2.31
6344
 
2.3
16309
 
2.1
9339
 
2.0
1052
BiNoM
2.5
951
 
2.4
31
 
2.3
104
 
2.2
264
 
2.1
280
 
2.0
307
 
1.0
2783
bioCycPlugin
0.9
2671
BiogridPlugin
0.2
1043
 
0.1
3957
BiomartClient
0.90
2828
 
0.80
6570
BioNetBuilder
2.0
5738
BioQualiPlugin
2.0
1265
 
1.1
1927
 
1.0
1273
BisoGenet
1.41
3069
 
1.40
1192
BLAST2SimilarityGraph
1.01
2875
 
1.0
2177
BNMatch
1.1
668
 
1.0
436
BubbleRouter
1.1
3397
 
1.0
2643
CABIN
2.1
3184
CalculateNodeDegree
1.0
1557
CARLSBAD
1.1
394
 
1.0
71
CellFateScout
0.95
139
CentiScaPe
1.21
2610
 
1.2
2114
 
1.1
1592
 
1.0
3632
ChartPlugin
1.1
735
 
1.0
375
ChemViz
1.3
359
 
1.1
2015
ClojureEngine
1.0
366
ClueGO
1.8
1793
 
1.71
634
 
1.7
199
 
1.6
103
 
1.5
313
 
1.4
2766
 
1.31
1327
 
1.3
1592
 
1.2
1889
 
1.1
1590
CluePedia
1.3
695
 
1.21
296
 
1.2
65
 
1.1
52
 
1.0
152
clusterExplorerPlugin
1.01
1829
 
1.0
1724
 
0.9
1823
clusterMaker
1.9
3691
 
1.8
1074
 
1.6
3052
 
1.5
838
 
1.11
1663
 
1.10
5251
 
1.1
1871
 
1.0
2476
ClusterONE
0.93
2488
 
0.92
688
 
0.91
1249
 
0.9
947
 
0.1
972
ClusterViz
1.2
3171
 
1.1
1328
 
1.0
1408
ClustnSee
1.0
1297
COMA
1.101
2093
 
1.1
1216
 
1.0
1259
commandTool
0.91
1920
 
0.9
1069
CommFinder
1.1
1579
CommonAttributes
2.0
1990
 
1.3
1372
ConReg
0.1
379
ConsensusPathDBplugin
1.0
1875
ContigScape
1.0
423
coreCommands
0.9
1266
CoryneRegNetLoader
1.101
1676
 
1.1
1286
 
1.0
1085
CyAnimator
0.9
2723
CyClus3D
3.3
1245
 
3.1
684
CyGoose
2.9
1016
 
2.8
793
 
2.7
1251
 
2.6
1340
 
2.5
1214
 
2.10
831
CyKEGGParser
1.3
894
 
1.1
619
 
1.0
569
Cyrface
1.0
888
 
0.2
494
CySBGN
1.2
767
 
1.1
171
 
1.0
371
CySBML
1.2
1757
cySBML
0.5
0
CyTableReaderPlugin
0.1
474
CyTargetLinker
2.1
888
 
2.0
756
 
1.0
917
CyThesaurus-ID-Mapping
1.31
2854
 
1.30
210
 
1.20
802
 
1.11
909
 
1.10
465
 
1.04
733
 
1.03
547
 
1.02
12
 
1.01
58
 
1.0
12
CytoCopteR
1.2
654
 
1.1
390
 
1.0
394
CytoHiCPlugin
1.1
414
 
1.0
479
cytoHubba
1.6
3213
 
1.5
847
 
1.4
759
 
1.3
411
 
1.2
660
 
1.1
1761
 
1.0
1362
CytoITMprobe
1.5
552
 
1.4
343
CytoKavosh
1.1
1495
 
1.0
462
Cytomcl
1.1
1642
 
1.1
1316
 
1.0
1007
 
1.0
0
Cytoprophet
1.0
3352
CytoSaddleSum
1.5
852
 
1.4
433
CytoscapeRPC
1.8
4438
 
1.7
763
 
1.6
781
 
1.5
474
 
1.4
487
 
1.3
682
 
1.2
715
 
1.1
485
 
1.0
771
CytoSEED
1.1
548
 
1.0
147
CytoSeVis
1.0
642
CytoSQL
1.0
1374
 
0.9
835
DisGeNET
1.02
0
DisplayNetworkFromFlatFile
1.0
1206
DomainGraph
3.01
1720
 
2.01
1773
 
2.0
762
DroID
1.0
2184
DualLayout
0.01
1237
DvD
1.0
261
dynamicXpr
1.3
3099
 
1.2
1946
edgeLengthPlugin
1.1
1836
 
1.0
1370
edgeLister
1.2
1211
 
1.1
1541
EnhancedSearch
1.2
3393
 
1.1
3506
 
1.0
1550
EnrichmentMap
1.3
1019
 
1.2
4744
 
1.1
1048
 
1.0
853
ENViz
1.1
1008
 
1.0
697
ExprEssence
1.20
1447
ExpressionCorrelation
1.01
4740
 
1.0
1448
FluxViz
0.12
926
 
0.09
631
FM3
1.1
1848
FNodeAtt
0.9
390
FreemakeSliderPlugin
1.0
0
FunNetViz
1.0
1255
GALANT
1.0
0
GASOLINE
1.0
471
GeneMANIA
3.2
3044
 
3.1
789
 
3.0
557
 
2.5
1549
 
2.4
1117
 
2.3
809
 
2.2
1294
 
2.1
896
 
2.0
839
 
1.0
827
GenomeSpaceLibsPlugin
0.1
202
GenomeSpacePlugin
0.1
578
Genoscape
1.2
2581
 
1.11
1176
 
1.1
979
GESTODifferent
1.0
0
GFD-Net
1.0
470
GIANT
1.0
0
GoogleChartFunctions
1.1
2446
GPEC
1.1
1299
GPML-Plugin
1.4
1628
 
1.3
1589
 
1.2
1249
 
1.1
964
 
1.0
714
 
0.9
769
 
0.8
1048
 
0.7
692
 
0.6
713
 
0.5
597
 
0.4
764
 
0.3
1233
 
0.2
1080
 
0.1
1107
GraMoFoNe
0.12
573
GraphletCounter
1.2
1446
 
1.0
831
GraphMLReader
0.11
3462
GroovyEngine
1.0
644
GroovyScriptingEngine
0.11
1181
GroupTool
1.3
1424
 
1.2
1771
 
1.1
1330
 
1.0
1606
HiderSlider
1.0
2338
HOMECAT
1.2
390
 
1.1
124
 
1.0
201
HyperEdgeEditor
2.68
1195
 
2.66
1227
 
2.65
799
 
2.62
1751
 
2.61
1522
 
2.60
1175
 
2.56
593
 
2.53
395
iCTNet
0.1
935
IDSwitcher
1.0
808
IgraphPlugin
0.1
971
IntActWSClient
0.66
2341
Interference
1.0
1315
iRefScape
1.18
1733
 
1.17
245
 
1.16
311
 
0.90
725
 
0.89
430
 
0.88
257
 
0.87
267
 
0.86
287
 
0.82
363
iRegulon
1.3
97
 
1.2
83
 
1.1
283
 
1.0
40
jActiveModules
2.23
8843
 
2.22
1509
 
2.21
1507
 
2.2
5506
JavaScriptEngine
1.0
1012
 
0.11
1103
KeyPathwayMiner
4.0
429
 
3.0
1809
 
2.1
593
 
2.0
380
 
1.0
535
KGMLReader
0.151
2436
 
0.15
1918
 
0.11
470
 
0.10
1257
 
0.06
1534
KNIMEConnector
1.1
957
 
1.0
750
LayoutSaverPlugin
1.0
1215
Mark
2
0
mcl-new
1.1
557
MCODE
1.32
9677
 
1.31
6344
 
1.3
6707
 
1.2
2921
MetaNetter
2.1
2555
MetaNodePlugin2
1.6
1826
 
1.5
1335
 
1.2
1762
 
1.1
1314
 
1.01
1418
 
1.0
1323
MetScape
2.33
2336
 
2.32
1721
 
2.31
1618
 
2.3
915
 
2.21
186
 
2.2
20
 
2.11
374
 
2.0
255
 
1.01
1783
 
1.0
1128
 
0.8
1610
MiMIplugin
3.11
5925
 
3.1
1074
 
3.01
4088
 
3.0
1626
 
2.2
1799
 
2.1
1584
 
2.0
1573
MINE
1.5
1870
 
1.0
913
MiSink
2.04
1802
 
2.03
1222
 
2.00
1456
ModuLand
1.5
0
 
1.4
0
MONET
2.1
1356
 
2.01
895
 
1.1
1913
Mosaic
1.1
1220
 
1.0
1376
MostHighlyConnectedSubgraphPlugin
1.0
545
MultiColoredNodes
2.540
1603
 
2.533
194
 
2.500
796
 
2.432
337
MultilevelLayoutPlugin
0.6
1953
 
0.41
1856
 
0.4
307
NamedSelection
1.5
1284
 
1.2
1828
 
1.1
1362
 
1.0
2290
NatureProtocolsWorkflow
1.0
3251
NCBIClient
0.92
2824
 
0.70
7537
NCBIEntrezGeneUserInterface
0.52
11293
NDBReaderPlugin
0.1
614
NeighborHighlight
1.0
4500
NeMo
1.4
3558
 
1.3
1225
NetAtlas
1.2
957
 
1.1
1417
NetCirChro
1.0
831
NetDS
3.0
1122
NetLink
0.1
2261
netMatch
2.2
1924
 
2.1
2363
NetTwo
0.1
531
NetworkEvolution
2.1
1074
NetworkPrioritizer
1.01
0
NOA
1.1
1353
 
1.0
413
nodeCharts
0.94
2887
 
0.92
739
 
0.91
740
 
0.91
18
OrthoNets
1.0
1217
OWLPlugin
1.0
1204
PanGIA
1.1
1508
 
1.0
653
Pathintegrator
1.0
1712
PerturbationAnalyzer
1.2
1432
 
1.1
446
 
1.0
675
 
0.2
530
 
0.1
673
PhosphositePlus Web Service Client Module
1.0
0
PhyloTree
0.1
1726
PICRClient
0.2
1869
PINA4MS
1.1
200
 
1.0
240
PiNGO
1.11
3665
 
1.10
876
 
1.00
1331
PinnacleZ
1.1
1939
 
1.0
1299
PSICQUICUniversalClient
0.31
2078
 
0.25
3693
PythonScriptingEngine
2.53
603
 
0.21
1963
RandomNetworks
1.0
5302
Reactome FIs
1.1
0
 
1.0beta
0
 
1.0
0
RemainingDegreeDistribution
1.0
942
ReOrientPlugin
1.0
1889
 
0.3
1029
RINalyzer
1.3
0
RubyScriptingEngine
1.7
264
 
1.0
607
 
0.21
1063
ScriptEngineManager
1.0
1169
 
0.08
1776
SessionForWeb
3.2
1138
 
3.1
1449
 
3.0
1123
SFLDLoader
1.3
1540
 
1.2
1315
 
1.0
1432
ShortestPath Plugin
1.1
5969
SimBoolNet
1.0
379
SimTrek
1.0
719
SLiMScape
1.6
644
 
1.5
160
 
1.2
153
 
1.0
143
SPNConverter
1.0
353
STOP
1.0
644
StringWSClient
1.2
4572
 
1.1
1557
 
1.0
1091
structureViz
1.9
1784
 
1.3
2150
 
1.2
1411
 
1.0
1814
SubnetworkCreator
1.2
851
 
1.1
516
 
1.0
1224
Sudy
2.9.3
0
Superpathways-Plugin
1.2
1818
 
1.0
1472
TransClust
1.01
1582
 
1.0
1812
VennDiagramGenerator
1.4
2735
 
1.02
1652
 
1.0
1356
VennDiagrams
0.5
960
 
0.3
1259
Viacomplex for Cytoscape
1.0
0
VistaClaraPlugin
1.05
3541
 
1.02
1891
 
1.01
2346
 
1.0
1506
 
0.20
180
WordCloud
1.0
1840
 
1.0
0