Package nct.networkblast

Class Summary

CompatColorCodingPathSearch<NodeType extends Comparable<? super NodeType>>	This class implements a color coding algorithm to search for pathways of size n in a given graph using a scoring object.
CompatComplexSearch<NodeType extends Comparable<? super NodeType>>	This class implements the SearchGraph interface.
CompatibilityGraph	This class creates a compatibility graph based on the homology of proteins between two species and the interaction graphs for the given species.
CompatibilityNode<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>>
CompatibilityScoreModel	This interface will provide the scoring interface for all scoring algorithms to be used on a Graph object.
HomologyGraph	This class creates a K-partite graph based on the homology of proteins between two or more species.
InteractionGraph	An implementation of a SequenceGraph that is specified by a SIF file.
NetworkBlast	The main program (NetworkBlast.java) will create all the objects needed to run the NetworkBlast algorithm.
PathGraph<NodeType extends Comparable<? super NodeType>>
TestSearch
ThresholdRandomizer