Package nct.score

Interface Summary

ScoreModel<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>>

This interface will provide the scoring interface for all scoring algorithms to be used on a Graph object.

Class Summary

LogLikelihoodScoreModel<NodeType extends Comparable<? super NodeType>>	This class implements the log likelihood edge scoring scheme described in the supplemental to Sharan, et al., 2005, Conserved patterns of protein interaction in multiple species, PNAS, 102(6).
SimpleEdgeScoreModel<NodeType extends Comparable<? super NodeType>>	This class implements a simple score model that basically just returns the weight associated with a particular object
SimpleNodeScoreModel<NodeType extends WeightedNode<?,java.lang.Double>>	This class implements a simple score model that basically just returns the weight associated with a particular object
SimpleScoreModel<NodeType extends WeightedNode<?,java.lang.Double>>	This class implements a simple score model that basically just returns the weight associated with a particular object