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Class Summary |
| BiojavaLocalBlast |
A Blast implementation of the HomologyModel interface that runs Blast locally. |
| BlastXMLFileFilterInputStream |
This class extends a FilterInputStream and is used to
filter out the extra xml version and DOCTYPE tags that come in Blast
"XML" files for multiple queries and wraps the entire document in
blast_aggregate tags. |
| LocalBlast |
A Blast implementation of the HomologyModel interface that runs Blast locally. |
| SIFHomologyReader |
A class that implements the HomologyModel interface by reading a SIF file
that contains nodes from two separate graphs. |