Uses of Interface
nct.service.synonyms.SynonymMapper

Packages that use SynonymMapper

nct.service.homology
nct.service.sequences
nct.service.synonyms

Uses of SynonymMapper in nct.service.homology

Fields in nct.service.homology declared as SynonymMapper

protected SynonymMapper	BiojavaLocalBlast.synonyms Used for mapping various ids to types of synonyms
protected SynonymMapper	LocalBlast.synonyms Used for mapping various ids to types of synonyms

Constructors in nct.service.homology with parameters of type SynonymMapper

BiojavaLocalBlast(java.util.Properties props, SynonymMapper synonyms, java.lang.String tmpOutFile, double eValue)
Constructor.

LocalBlast(java.util.Properties props, SynonymMapper synonyms, java.lang.String tmpOutFile, double eValue)
Constructor.

Uses of SynonymMapper in nct.service.sequences

Fields in nct.service.sequences declared as SynonymMapper

protected SynonymMapper

DIPSequenceDatabase.synonyms

Constructors in nct.service.sequences with parameters of type SynonymMapper

DIPSequenceDatabase(java.lang.String fastaFile, SynonymMapper synonyms)

Uses of SynonymMapper in nct.service.synonyms

Classes in nct.service.synonyms that implement SynonymMapper

class

DIPSynonyms Implements a SynonymMapper based on a DIP XIN file.