nct.visualization.cytoscape.dual
Class DualLayoutTask

java.lang.Object
  java.lang.Thread
      nct.visualization.cytoscape.dual.DualLayoutTask

All Implemented Interfaces:

java.lang.Runnable

public class DualLayoutTask
extends java.lang.Thread

The Thread that does the actual DualLayout calculations.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

DualLayoutTask(cytoscape.CyNetwork sifNetwork)

Method Summary

void	layoutNetwork(phoebe.PGraphView view) Creates the layout of the network using the SpringEmbeddedLayouter.
void	splitNetwork(cytoscape.CyNetwork splitNetwork) Separates the network nodes into their constituent parts and creates the homology edges between them.

Methods inherited from class java.lang.Thread

activeCount, checkAccess, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, run, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DualLayoutTask

public DualLayoutTask(cytoscape.CyNetwork sifNetwork)

Parameters:

sifNetwork - A subgraph of the compatability graph that is a conserved complex.

Method Detail

layoutNetwork

public void layoutNetwork(phoebe.PGraphView view)

Creates the layout of the network using the SpringEmbeddedLayouter.

Parameters:

view - The graph view used for creating the layout.

splitNetwork

public void splitNetwork(cytoscape.CyNetwork splitNetwork)

Separates the network nodes into their constituent parts and creates the homology edges between them.

Parameters:

splitNetwork - The network to be separated.