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id
- Variable in class nct.graph.basic.
BasicGraph
The id of the graph.
idMap
- Variable in class nct.service.synonyms.
DIPSynonyms
Maps a synonym to a dip file id.
idNameMap
- Variable in class nct.service.interactions.
DIPInteractionNetwork
idUidMap
- Variable in class nct.service.interactions.
DIPInteractionNetwork
ignorableWhitespace(char[], int, int)
- Method in class nct.xml.
XMLSaxEventDistributor
ignoreWeights
- Variable in class nct.graph.util.
DegreePreservingRandomizer
InteractionGraph
- Class in
nct.networkblast.graph
An implementation of a SequenceGraph that is specified by a SIF file.
InteractionGraph()
- Constructor for class nct.networkblast.graph.
InteractionGraph
Constructor.
InteractionGraph(String)
- Constructor for class nct.networkblast.graph.
InteractionGraph
interactionGraphs
- Variable in class nct.networkblast.graph.
CompatibilityGraph
InteractionNetwork
<
NodeType
extends java.lang.Comparable<? super
NodeType
>,
WeightType
extends java.lang.Comparable<? super
WeightType
>> - Interface in
nct.service.interactions
A generic interface that describes a method used to update a graph based on some sort of interaction network input.
intGraph1
- Variable in class nct.networkblast.
NetworkBlast
intGraph2
- Variable in class nct.networkblast.
NetworkBlast
intList
- Variable in class nct.service.interactions.
SIFInteractionNetwork
Each String array represents a line in the SIF file.
isEdge(NodeType, NodeType)
- Method in class nct.graph.basic.
BasicGraph
Indicates whether the specified nodes refer to a valid edge in the graph.
isEdge(NodeType, NodeType)
- Method in interface nct.graph.
Graph
Indicates whether the specified nodes refer to a valid edge in the graph.
isNode(NodeType)
- Method in class nct.graph.basic.
BasicGraph
Indicates whether the specified node is contained in the graph.
isNode(NodeType)
- Method in interface nct.graph.
Graph
Indicates whether the specified nodes is contained in the graph.
isPartition(PartitionType)
- Method in class nct.graph.basic.
BasicKPartiteGraph
Checks whether a specified partition is one of the partitions used in the graph.
isPartition(PartitionType)
- Method in interface nct.graph.
KPartiteGraph
Checks whether a specified partition is one of the partitions used in the graph.
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