Uses of Interface
nct.service.homology.HomologyModel

Packages that use HomologyModel
nct.networkblast.graph   
nct.service.homology.blast   
nct.service.homology.sif   
 

Uses of HomologyModel in nct.networkblast.graph
 

Fields in nct.networkblast.graph declared as HomologyModel
protected  HomologyModel HomologyGraph.homModel
           
 

Constructors in nct.networkblast.graph with parameters of type HomologyModel
HomologyGraph(HomologyModel homModel, double exThresh)
           
HomologyGraph(HomologyModel homModel, double exThresh, java.util.Collection<SequenceGraph<java.lang.String,java.lang.Double>> graphs)
           
 

Uses of HomologyModel in nct.service.homology.blast
 

Classes in nct.service.homology.blast that implement HomologyModel
 class BiojavaLocalBlast
          A Blast implementation of the HomologyModel interface that runs Blast locally.
 class LocalBlast
          A Blast implementation of the HomologyModel interface that runs Blast locally.
 

Uses of HomologyModel in nct.service.homology.sif
 

Classes in nct.service.homology.sif that implement HomologyModel
 class SIFHomologyReader
          A class that implements the HomologyModel interface by reading a SIF file that contains nodes from two separate graphs.