Uses of Interface
nct.service.synonyms.SynonymMapper

Packages that use SynonymMapper
nct.service.homology.blast   
nct.service.sequences   
nct.service.synonyms   
 

Uses of SynonymMapper in nct.service.homology.blast
 

Fields in nct.service.homology.blast declared as SynonymMapper
protected  SynonymMapper LocalBlast.synonyms
          Used for mapping various ids to types of synonyms
protected  SynonymMapper BiojavaLocalBlast.synonyms
          Used for mapping various ids to types of synonyms
 

Constructors in nct.service.homology.blast with parameters of type SynonymMapper
BiojavaLocalBlast(java.util.Properties props, SynonymMapper synonyms, java.lang.String tmpOutFile, double eValue)
          Constructor.
LocalBlast(java.util.Properties props, SynonymMapper synonyms, java.lang.String tmpOutFile, double eValue)
          Constructor.
 

Uses of SynonymMapper in nct.service.sequences
 

Fields in nct.service.sequences declared as SynonymMapper
protected  SynonymMapper DIPSequenceDatabase.synonyms
           
 

Constructors in nct.service.sequences with parameters of type SynonymMapper
DIPSequenceDatabase(java.lang.String fastaFile, SynonymMapper synonyms)
           
 

Uses of SynonymMapper in nct.service.synonyms
 

Classes in nct.service.synonyms that implement SynonymMapper
 class DIPSynonyms
          Implements a SynonymMapper based on a DIP XIN file.