nct.parsers
Class FastaProteinParser
java.lang.Object
nct.parsers.FastaProteinParser
public class FastaProteinParser
- extends java.lang.Object
A simple class that provides a method to parse a multiple FASTA file.
Method Summary |
static org.biojava.bio.seq.SequenceIterator |
parseFile(java.lang.String FASTAFileName)
A simple method that parses a multiple FASTA file and returns
a BioJava SequenceIterator. |
static org.biojava.bio.seq.SequenceIterator |
parseString(java.lang.String sequenceString)
A simple method that parses a multiple FASTA file and returns
a BioJava SequenceIterator. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
FastaProteinParser
public FastaProteinParser()
parseFile
public static org.biojava.bio.seq.SequenceIterator parseFile(java.lang.String FASTAFileName)
throws org.biojava.bio.BioException,
java.util.NoSuchElementException,
java.io.FileNotFoundException
- A simple method that parses a multiple FASTA file and returns
a BioJava SequenceIterator.
- Parameters:
FASTAFileName
- The name of the multiple Fasta file to parse.
- Returns:
- A BioJava SequenceIterator.
- Throws:
org.biojava.bio.BioException
java.util.NoSuchElementException
java.io.FileNotFoundException
parseString
public static org.biojava.bio.seq.SequenceIterator parseString(java.lang.String sequenceString)
throws org.biojava.bio.BioException,
java.util.NoSuchElementException,
java.io.FileNotFoundException
- A simple method that parses a multiple FASTA file and returns
a BioJava SequenceIterator.
- Parameters:
sequenceString
- A string containing fasta sequence data.
- Returns:
- A BioJava SequenceIterator.
- Throws:
org.biojava.bio.BioException
java.util.NoSuchElementException
java.io.FileNotFoundException