Uses of Class
nct.graph.basic.BasicGraph

Packages that use BasicGraph
nct.graph.basic   
nct.networkblast.graph   
 

Uses of BasicGraph in nct.graph.basic
 

Subclasses of BasicGraph in nct.graph.basic
 class BasicDistanceGraph<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>>
          An extension of BasicGraph that calculates the minimum distance between nodes.
 class BasicKPartiteGraph<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>,PartitionType extends Comparable<? super PartitionType>>
          A generic implementation of the KPartiteGraph interface.
 class BlastGraph<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>>
          An extension of BasicDistanceGraph that implements SequenceGraph and contains a pointer to a Blast database.
 class FastaGraph<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>>
          An extension of BasicDistanceGraph that implements the SequenceGraph interface and contains a (pointer to a) fasta database.
 

Methods in nct.graph.basic that return BasicGraph
 BasicGraph<NodeType,WeightType> BasicGraph.clone()
          Returns a clone of this graph.
 

Uses of BasicGraph in nct.networkblast.graph
 

Subclasses of BasicGraph in nct.networkblast.graph
 class CompatibilityGraph
          This class creates a compatibility graph based on the homology of proteins between two species and the interaction graphs for the given species.
 class HomologyGraph
          This class creates a K-partite graph based on the homology of proteins between two or more species.
 class InteractionGraph
          An implementation of a SequenceGraph that is specified by a SIF file.