Package nct.graph.basic

Class Summary
BasicDistanceGraph<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>> An extension of BasicGraph that calculates the minimum distance between nodes.
BasicEdge<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>> A generic implementation of the Edge interface.
BasicGraph<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>> A generic implementation of the Graph interface.
BasicKPartiteGraph<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>,PartitionType extends Comparable<? super PartitionType>> A generic implementation of the KPartiteGraph interface.
BasicWeightedNode<IDType extends Comparable<? super IDType>,WeightType extends Comparable<? super WeightType>>  
BlastGraph<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>> An extension of BasicDistanceGraph that implements SequenceGraph and contains a pointer to a Blast database.
FastaGraph<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>> An extension of BasicDistanceGraph that implements the SequenceGraph interface and contains a (pointer to a) fasta database.