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Packages that use HomologyModel | |
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nct.networkblast | |
nct.service.homology |
Uses of HomologyModel in nct.networkblast |
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Fields in nct.networkblast declared as HomologyModel | |
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protected HomologyModel |
HomologyGraph.homModel
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Constructors in nct.networkblast with parameters of type HomologyModel | |
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HomologyGraph(HomologyModel homModel,
double exThresh)
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HomologyGraph(HomologyModel homModel,
double exThresh,
java.util.Collection<SequenceGraph<java.lang.String,java.lang.Double>> graphs)
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Uses of HomologyModel in nct.service.homology |
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Classes in nct.service.homology that implement HomologyModel | |
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class |
BiojavaLocalBlast
A Blast implementation of the HomologyModel interface that runs Blast locally. |
class |
LocalBlast
A Blast implementation of the HomologyModel interface that runs Blast locally. |
class |
SIFHomologyReader
A class that implements the HomologyModel interface by reading a SIF file that contains nodes from two separate graphs. |
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