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Packages that use BasicGraph | |
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nct.graph | |
nct.networkblast |
Uses of BasicGraph in nct.graph |
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Subclasses of BasicGraph in nct.graph | |
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class |
BasicDistanceGraph<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>>
An extension of BasicGraph that calculates the minimum distance between nodes. |
class |
BasicKPartiteGraph<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>,PartitionType extends Comparable<? super PartitionType>>
A generic implementation of the KPartiteGraph interface. |
class |
BlastGraph<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>>
An extension of BasicDistanceGraph that implements SequenceGraph and contains a pointer to a Blast database. |
class |
FastaGraph<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>>
An extension of BasicDistanceGraph that implements the SequenceGraph interface and contains a (pointer to a) fasta database. |
Methods in nct.graph that return BasicGraph | |
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BasicGraph<NodeType,WeightType> |
BasicGraph.clone()
Returns a clone of this graph. |
Uses of BasicGraph in nct.networkblast |
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Subclasses of BasicGraph in nct.networkblast | |
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class |
CompatibilityGraph
This class creates a compatibility graph based on the homology of proteins between two species and the interaction graphs for the given species. |
class |
HomologyGraph
This class creates a K-partite graph based on the homology of proteins between two or more species. |
class |
InteractionGraph
An implementation of a SequenceGraph that is specified by a SIF file. |
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