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java.lang.Objectjava.lang.Thread
nct.visualization.cytoscape.dual.DualLayoutTask
public class DualLayoutTask
The Thread that does the actual DualLayout calculations.
Nested Class Summary |
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Nested classes/interfaces inherited from class java.lang.Thread |
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java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler |
Field Summary |
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Fields inherited from class java.lang.Thread |
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MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY |
Constructor Summary | |
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DualLayoutTask(cytoscape.CyNetwork sifNetwork)
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Method Summary | |
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void |
layoutNetwork(phoebe.PGraphView view)
Creates the layout of the network using the SpringEmbeddedLayouter . |
void |
splitNetwork(cytoscape.CyNetwork splitNetwork)
Separates the network nodes into their constituent parts and creates the homology edges between them. |
Methods inherited from class java.lang.Thread |
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activeCount, checkAccess, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, run, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public DualLayoutTask(cytoscape.CyNetwork sifNetwork)
sifNetwork
- A subgraph of the compatability
graph that is a conserved complex.Method Detail |
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public void layoutNetwork(phoebe.PGraphView view)
SpringEmbeddedLayouter
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view
- The graph view used for creating the layout.public void splitNetwork(cytoscape.CyNetwork splitNetwork)
splitNetwork
- The network to be separated.
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