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parse(String)
- Static method in class nct.parsers.
SIFParser
A simple method that parses a SIF formatted file.
parse(String)
- Method in class nct.xml.
XMLSaxEventDistributor
parseFile(String)
- Static method in class nct.parsers.
FastaProteinParser
A simple method that parses a multiple FASTA file and returns a BioJava SequenceIterator.
parseString(String)
- Static method in class nct.parsers.
FastaProteinParser
A simple method that parses a multiple FASTA file and returns a BioJava SequenceIterator.
partitionMap
- Variable in class nct.graph.
BasicKPartiteGraph
A mapping of nodes to partitions.
PathGraph
<
NodeType
extends java.lang.Comparable<? super
NodeType
>> - Class in
nct.networkblast
PathGraph(NodeType)
- Constructor for class nct.networkblast.
PathGraph
pathSize
- Static variable in class nct.networkblast.
NetworkBlast
processingInstruction(String, String)
- Method in class nct.xml.
XMLSaxEventDistributor
props
- Variable in class nct.service.homology.
BiojavaLocalBlast
A properties object that contains the installation specific details of where and how to run Blast.
props
- Variable in class nct.service.homology.
LocalBlast
A properties object that contains the installation specific details of where and how to run Blast.
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