BasicDistanceGraph
BasicEdge
BasicGraph
BasicKPartiteGraph
BasicWeightedNode
BiojavaLocalBlast
BlastGraph
BlastXMLFileFilterInputStream
ColorCodingPathSearch
CompatColorCodingPathSearch
CompatComplexSearch
CompatibilityGraph
CompatibilityNode
CompatibilityScoreModel
CytoscapeConverter
DegreePreservingRandomizer
DIPInteractionNetwork
DIPSequenceDatabase
DIPSynonyms
DistanceGraph
DualLayout
DualLayoutTask
DuplicateThresholdFilter
Edge
EdgeWeightShuffle
FastaGraph
FastaProteinParser
Filter
Graph
GraphRandomizer
HomologyGraph
HomologyModel
InteractionGraph
InteractionNetwork
KPartiteGraph
LocalBlast
LogLikelihoodScoreModel
Monitor
Monitorable
NetworkBlast
NewComplexSearch
NodePairSet
PathGraph
ScoreModel
SearchGraph
SequenceDatabase
SequenceGraph
SIFHomologyReader
SIFInteractionNetwork
SIFParser
SIFWriter
SimpleEdgeScoreModel
SimpleNodeScoreModel
SimpleScoreModel
SortFilter
SpringEmbeddedLayouter
SynonymMapper
TestSearch
ThresholdRandomizer
UniqueCompatNodeFilter
WeightedNode
XMLSaxEventDistributor
ZIPSIFWriter
|