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Class Summary | |
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CompatColorCodingPathSearch<NodeType extends Comparable<? super NodeType>> | This class implements a color coding algorithm to search for pathways of size n in a given graph using a scoring object. |
CompatComplexSearch<NodeType extends Comparable<? super NodeType>> | This class implements the SearchGraph interface. |
CompatibilityGraph | This class creates a compatibility graph based on the homology of proteins between two species and the interaction graphs for the given species. |
CompatibilityNode<NodeType extends Comparable<? super NodeType>,WeightType extends Comparable<? super WeightType>> | |
CompatibilityScoreModel | This interface will provide the scoring interface for all scoring algorithms to be used on a Graph object. |
HomologyGraph | This class creates a K-partite graph based on the homology of proteins between two or more species. |
InteractionGraph | An implementation of a SequenceGraph that is specified by a SIF file. |
NetworkBlast | The main program (NetworkBlast.java) will create all the objects needed to run the NetworkBlast algorithm. |
PathGraph<NodeType extends Comparable<? super NodeType>> | |
TestSearch | |
ThresholdRandomizer |
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