Uses of Interface
nct.service.homology.HomologyModel

Packages that use HomologyModel
nct.networkblast   
nct.service.homology   
 

Uses of HomologyModel in nct.networkblast
 

Fields in nct.networkblast declared as HomologyModel
protected  HomologyModel HomologyGraph.homModel
           
 

Constructors in nct.networkblast with parameters of type HomologyModel
HomologyGraph(HomologyModel homModel, double exThresh)
           
HomologyGraph(HomologyModel homModel, double exThresh, java.util.Collection<SequenceGraph<java.lang.String,java.lang.Double>> graphs)
           
 

Uses of HomologyModel in nct.service.homology
 

Classes in nct.service.homology that implement HomologyModel
 class BiojavaLocalBlast
          A Blast implementation of the HomologyModel interface that runs Blast locally.
 class LocalBlast
          A Blast implementation of the HomologyModel interface that runs Blast locally.
 class SIFHomologyReader
          A class that implements the HomologyModel interface by reading a SIF file that contains nodes from two separate graphs.