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nct.graph.* |
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nct.graph.SequenceGraph<NodeType extends java.lang.Comparable<? super NodeType>,WeightType extends java.lang.Comparable<? super WeightType>> | ||
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public static final int |
BLAST |
2 |
public static final int |
DUMMY |
0 |
public static final int |
FASTA |
1 |
nct.service.* |
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nct.service.homology.BiojavaLocalBlast | ||
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public static final java.lang.String |
E_VALUE |
"E_VALUE" |
public static final java.lang.String |
OUTPUT_FILE |
"OUTPUT_FILE" |
public static final java.lang.String |
QUERY_SENTINEL |
"QUERY_SEQS" |
public static final java.lang.String |
TARGET_DB_SENTINEL |
"TARGET_DB" |
nct.service.homology.LocalBlast | ||
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public static final java.lang.String |
E_VALUE |
"E_VALUE" |
public static final java.lang.String |
OUTPUT_FILE |
"OUTPUT_FILE" |
public static final java.lang.String |
QUERY_SENTINEL |
"QUERY_SEQS" |
public static final java.lang.String |
TARGET_DB_SENTINEL |
"TARGET_DB" |
nct.visualization.* |
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nct.visualization.cytoscape.dual.SpringEmbeddedLayouter | ||
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public static final double |
DEFAULT_ANTICOLLISION_SPRING_STRENGTH |
100.0 |
public static final double |
DEFAULT_AVERAGE_ITERATIONS_PER_NODE |
20.0 |
public static final double |
DEFAULT_DISCONNECTED_NODE_DISTANCE_SPRING_REST_LENGTH |
2500.0 |
public static final double |
DEFAULT_DISCONNECTED_NODE_DISTANCE_SPRING_STRENGTH |
0.0 |
public static final double |
DEFAULT_NODE_DISTANCE_REST_LENGTH_CONSTANT |
200.0 |
public static final double |
DEFAULT_NODE_DISTANCE_STRENGTH_CONSTANT |
15.0 |
public static final int |
DEFAULT_NUM_LAYOUT_PASSES |
2 |
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