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public interface SequenceGraph<NodeType extends java.lang.Comparable<? super NodeType>,WeightType extends java.lang.Comparable<? super WeightType>>
An interface that describes accessing a sequence database associated with the graph.
Field Summary | |
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static int |
BLAST
A Blast database. |
static int |
DUMMY
A dummy (non-existant) database type. |
static int |
FASTA
A Fasta database, usually referring to a multiple fasta formatted file. |
Method Summary | |
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java.lang.String |
getDBLocation()
Returns the location of the database used. |
java.lang.String |
getDBName()
Returns the name of the database used. |
int |
getDBType()
Returns an integer identifying the type of database used. |
void |
setDBLocation(java.lang.String location)
Sets the location of the database. |
void |
setDBName(java.lang.String name)
Sets the name of the database. |
void |
setDBType(int type)
Sets the type of the database. |
Methods inherited from interface nct.graph.DistanceGraph |
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getDistance |
Methods inherited from interface nct.graph.Graph |
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addEdge, addEdge, addNode, clone, compareTo, degreeOfNode, getEdge, getEdgeDescription, getEdgeList, getEdges, getEdgeWeight, getId, getNeighbors, getNodes, getScore, isEdge, isNode, numberOfEdges, numberOfNodes, removeEdge, removeNode, setEdgeDescription, setEdgeWeight, setScore, toString |
Field Detail |
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static final int DUMMY
static final int FASTA
static final int BLAST
Method Detail |
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java.lang.String getDBName()
java.lang.String getDBLocation()
int getDBType()
void setDBName(java.lang.String name)
name
- The new name of the sequence database.void setDBLocation(java.lang.String location)
location
- The new location of the sequence database.void setDBType(int type)
type
- The new type of the sequence database.
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