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id - Variable in class nct.graph.BasicGraph
The id of the graph.
idMap - Variable in class nct.service.synonyms.DIPSynonyms
Maps a synonym to a dip file id.
idNameMap - Variable in class nct.service.interactions.DIPInteractionNetwork
 
idUidMap - Variable in class nct.service.interactions.DIPInteractionNetwork
 
ignorableWhitespace(char[], int, int) - Method in class nct.xml.XMLSaxEventDistributor
 
ignoreWeights - Variable in class nct.graph.util.DegreePreservingRandomizer
 
InteractionGraph - Class in nct.networkblast
An implementation of a SequenceGraph that is specified by a SIF file.
InteractionGraph() - Constructor for class nct.networkblast.InteractionGraph
Constructor.
InteractionGraph(String) - Constructor for class nct.networkblast.InteractionGraph
 
interactionGraphs - Variable in class nct.networkblast.CompatibilityGraph
 
InteractionNetwork<NodeType extends java.lang.Comparable<? super NodeType>,WeightType extends java.lang.Comparable<? super WeightType>> - Interface in nct.service.interactions
A generic interface that describes a method used to update a graph based on some sort of interaction network input.
intGraph1 - Variable in class nct.networkblast.NetworkBlast
 
intGraph2 - Variable in class nct.networkblast.NetworkBlast
 
intList - Variable in class nct.service.interactions.SIFInteractionNetwork
Each String array represents a line in the SIF file.
isEdge(NodeType, NodeType) - Method in class nct.graph.BasicGraph
Indicates whether the specified nodes refer to a valid edge in the graph.
isEdge(NodeType, NodeType) - Method in interface nct.graph.Graph
Indicates whether the specified nodes refer to a valid edge in the graph.
isEdge(NodeType, NodeType) - Method in class nct.networkblast.PathGraph
 
isNode(NodeType) - Method in class nct.graph.BasicGraph
Indicates whether the specified node is contained in the graph.
isNode(NodeType) - Method in interface nct.graph.Graph
Indicates whether the specified nodes is contained in the graph.
isNode(NodeType) - Method in class nct.networkblast.PathGraph
 
isPartition(PartitionType) - Method in class nct.graph.BasicKPartiteGraph
Checks whether a specified partition is one of the partitions used in the graph.
isPartition(PartitionType) - Method in interface nct.graph.KPartiteGraph
Checks whether a specified partition is one of the partitions used in the graph.

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