Curriculum Vitae |
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Lee, KiYoung (Ph.D.)
Postdoctoral Scholar Prof. Ideker's Lab, Department of Bioengineering University of California, San Diego (UCSD) 9500 Gilman Drive, Mail Code 0412, La Jolla, CA 92093-0412 Tel: +1-858-822-4665 Fax: +1-858-822-4246 E-mail: kiylee@bioeng.ucsd.edu |
Education
- Ph.D. Feb/17/2006 Dissertation: "Support Vector Based Classification for Bio-Data Mining" November 22, 2005. Department of Electrical Engineering and Computer Science (EECS) Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Korea Supervisor: Prof. Kwang Hyung Lee
- M.S. Feb/15/2002 Thesis: "New Minutiae Extraction Method using Ridge Tracing on Fuzzified Fingerprint" December 10, 2001. Department of Electrical Engineering and Computer Science (EECS) Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Korea Supervisor: Prof. Kwang Hyung Lee
- B.S. Feb/25/2000 Department of Computer Engineering Kyungpook National University (KNU) Daegu, Korea
RESEARCH AREAS
- Bioinformatics, Systems Biology, and Bio-Knowledge Discovery
- Machine Learning, Clustering, Data Mining, Network Classification, and Computer Vision
PROFESSIONAL EXPERIENCE
- Post-doctoral Scholar, Ideker's Lab , Bioengineering, University of California at San Diego, Nov/01/2006 - Current.
- Post-doctoral Scholar, Lee Gil Ya Cancer and Diabetes Institute , Gachon University of Medicine and Science, May/01/2008 - Current.
- Visting Scholar, Structural Biology Lab , Salk Institute, Mar/01/2008 - April/30/2008.
- Post-doctoral Scholar, IBM-KAIST Bio-Computing Research Center, KAIST, Feb/20/2006 - Oct/31/2006.
- Research Staff, Advanced Information Technology Research Center (AITrc), KAIST, Feb/20/2006 - Oct/31/2006.
- Research Staff, Bioanalysis and Biotransformation Research Center (BBrc), KIST, Feb/20/2006 - Oct/31/2006.
ACADEMIC / SOCIAL ACTIVITIES
- Program Committee Member, The 2nd International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2009), Porto, Portugal, January 2009
- Program Committee Member, ACM Second International Workshop of Data and Text Mining Methods in Bioinformatics (DTMBIO), Napa Valley, CA, USA, October 2008
- Peer Reviewer, Bioinformatics, July 2007 - Current.
- Peer Reviewer, IEEE Transactions on Systems, Man and Cybernetics, June 2006 - Current.
- Member, Korea Information Science Society, March 2005 - Current.
- Member, Korea Fuzzy Logic and Intelligent Systems Society member, September 2004 - Current.
MAJOR RESEARCH PROJECTS
- Development of Statistical Pattern Analysis Techniques for Metabolomics, supported by Ministry of Science and Technology, September 2004 - October 2006.
- Development of Modeling Systems through Fusion Techniques for Systems Biology Models and Data, supported by Ministry of Science and Technology, September 2003 - August 2004.
- Development of Multi-Agent Platform for Intelligent Agents, supported by Ministry of Science and Technology, March 2000 - February 2002.
TEACHING EXPERIENCE
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Mar/01/2002 - Feb/17/2006 Educational Instructor (Java Programming Language)
Department of Electrical Engineering and Computer Science, KAIST
Daejeon, Korea
- Mar/01/2002 - Feb/17/2006 Instructor (C Programming Language) Informations and Communications Engineering, Paichai University Daejeon, Korea
INVITED TALKS
- Ewha Womans University, "Prediction of functional information of proteins based on protein interaction networks," July 2008.
- Human Proteome Organization (HUPO) 6th ANNUAL WORLD CONGRESS, "An Integrated Framework for Protein Localization Prediction using PPI Networks," October 2007.
ACADEMIC RECOGNITION
- Session Best Presentation Award, Joint 3rd International Conference on Soft Computing and Intelligent Systems and 7th International Symposium on Advanced Intelligent Systems (SCIS&ISIS2006), September 2006.
- Outstanding Teaching Assistant Award (4 times), Department of Electrical Engineering and Computer Science, KAIST, March 2002 - February 2006.
- Korean Government Scholarship Student, KAIST, March 2000 - February 2006.
- Distinguished Research Award, IBM-KAIST Bio-Computing Research Center, September 2005.
- Outstanding Research Paper Award, International Symposium on Advanced Intelligent Systems (ISIS), October 2005.
- Distinguished Research Award, IBM-KAIST Bio-Computing Research Center, February 2005.
- Distinguished Service Award and Reward, Advanced Information Technology Research Center (AITrc), KAIST, June 2002.
- KFIS Outstanding Paper Award, Korea Fuzzy Logic and Intelligent Systems Society, April 2001.
- Full Scholarship, Korea Telecommunication (KT) Corp., September 1997 - February 2000.
- Merited-Based Scholarship, Kyungpook National University (KNU), March 1993 - August 1994.
SELECTED PUBLICATIONS
Journal Papers (International, SCI)
- Hojung Nam, Taewoo Ryu, KiYoung Lee, Sangwoo Kim, Doheon Lee, "Computational Identification of Significantly Regulated Metabolic Reactions by Integration of Data on Enzyme Activity and Gene Expression," J BIOCHEM MOL BIOL, October 2008.
- KiYoung Lee, Dae-Won Kim, Kwang H. Lee, and Doheon Lee, "Density-Induced Support Vector Data Description," IEEE Transactions on Neural Networks, vol. 18, no. 1, pp. 284 - 289, January 2007.
- Dae-Won Kim, KiYoung Lee, Kwang H. Lee, and Doheon Lee, "Towards Clustering of Incomplete Microarray Data Without the Use of Imputation," Bioinformatics, vol. 23, no. 1, pp. 107 - 113, January 2007.
- KiYoung Lee, Dae-Won Kim, DoKyun Na, Doheon Lee, Kwang H. Lee, "Reliable Protein Localization Prediction from Imbalanced and Overlapped Data Sets," Nucleic Acids Research, vol. 34, no. 17, pp. 4655 - 4666, September 2006.
- Kyu-il Cho, KiYoung Lee, Kwang H. Lee, Dongsup Kim, and Doheon Lee, "Specificity of molecular interactions in transient protein-protein interaction interfaces," PROTEINS: Structure, Function, and Bioinformatics, vol. 65, no. 3, pp. 593 - 606, August 2006.
- KiYoung Lee, Dae-Won Kim, Kwang H. Lee, and Doheon Lee, "Improving Support Vector Data Description Using Local Density Degree," Pattern Recognition, vol. 38, no. 10, pp. 1768-1771, October 2005.
- KiYoung Lee, Dae-Won Kim, Doheon Lee, and Kwang H. Lee, "Possibilistic Support Vector Machines," Pattern Recognition, vol. 38, no. 8, pp. 1325-1327, August 2005.
- Dae-Won Kim, KiYoung Lee, Doheon Lee, and Kwang H. Lee, "A K-Populations Algorithm for Clustering Categorical Data," Pattern Recognition, vol. 38, no. 7, pp. 1131-1134, July 2005.
- Dae-Won Kim, KiYoung Lee, Doheon Lee, and Kwang H. Lee, "A Kernel-Based Subtractive Clustering Method," Pattern Recognition Letters, vol. 26, no. 7, pp. 379-891, May 2005.
- Dae-Won Kim, KiYoung Lee, Doheon Lee, and Kwang H. Lee, "Evaluation of the Performance of Clustering Algorithms in Kernel-Induced Feature Space," Pattern Recognition, vol. 38, no. 4, pp. 607-611, April 2005.
Journal Papers (Korean)
- KiYoung Lee, Se-hoon Kim, Sang-gab Jeong, Kwang H. Lee, and Kwangyun Wohn, "Detecting Fingerprint Features with Immediate Adaptation to Local Fingerprint Quality using Fuzzy Logic," Journal of Fuzzy Logic and Intelligent Systems, vol. 11, no. 3, pp. 258-263, 2001.
Conference Proceedings (International)
- KiYoung Lee, Inho Park, Kiryong Ha, Doheon Lee and Kwang H. Lee, "MetaAnalyzer: A software tool for analyzing GC-MS data," The 7nd International Conference on Systems Biology (ICSB'2006), Yokohama, Japan, October, 2006.
- KiYoung Lee, SungWon Jung, Doheon Lee, and Kwang H. Lee, "A Reliable Prediction Method for Protein Subcellular Localization," Joint 3rd International Conference on Soft Computing and Intelligent Systems and 7th International Symposium on Advanced Intelligent Systems (SCIS&ISIS2006), pp. 1093 - 1099, Tokyo, Japan, September 2006.
- Dae-Won Kim, SungWon Jung, KiYoung Lee, Doheon Lee, and Kwang H. Lee, "Finding Different Shapes and Orientations of Clusters from Microarray Data," Joint 3rd International Conference on Soft Computing and Intelligent Systems and 7th International Symposium on Advanced Intelligent Systems (SCIS&ISIS2006), pp. 664 - 669, Tokyo, Japan, September 2006.
- KiYoung Lee, Doheon Lee, and Kwang H. Lee, "A New Data Description Method Based on the Density-Induced Support Vector Information," The 6nd International Symposium on Advanced Intelligent Systems (ISIS'2005), pp. 616-621, Yousu, Korea, September 2005.
- KiYoung Lee, Kwang H. Lee, and Doheon Lee, "Significance-based Support Vector Machines for Incomplete Data," The 4th International Conference on Information and Management Sciences (IMS'2005), vol. 4, pp. 299~304, Kunming, China, July 2005.
Conference Proceedings (Korean)
- Inho Park, Juhyun Jung, KiYoung Lee, MinSu Kim, HeaYoung Cho, Doheon Lee, and Kwang H. Lee, "Platform Development for the Analysis of GC-MS Metabolomics Data," The 7the International Conference of Korean Society for Bioinformatics (KSBI), pp. 86 - 89, September 2006.
- KiYoung Lee, Doheon Lee, and Kwang H. Lee, "A New Support Vector Data Description based on Relative Density Degree," The 2nd Joint Symposium on Computational Intelligence (JSCI 2006), pp. 118-122, January 2006.
- KiYoung Lee, Doheon Lee, and Kwang H. Lee, "A New Support Vector Machines for Classifying Uncertain Data," In Proceedings of Korea Information Science Society Conference, vol. 31, no. 2, pp. 703-705, September 2004.
- KiYoung Lee, Se-hoon Kim, Sang-gab Jeong, Kwang H. Lee, and Kwangyun Wohn, "Detecting Fingerprint Features with Immediate Adaptation to Local Fingerprint Quality using Fuzzy Logic," In Proceedings of Korea Fuzzy Logic and Intelligent Systems Society, vol. 11, no. 1, pp. 250-255, May 2001.
Department of Bioengineering, University of California at San Diego (UCSD) |