Homepage of Dwight Kuo Dwight Kuo
PhD Program, Laboratory for Integrative Network Biology
Department of Bioengineering, University of California, San Diego
Supervisor: Trey Ideker, Assoc. Professor
Office: PFBH 202
Phone:
E-mail: pdkuo AT ucsd DOT edu
Journal Publications:
- Leier, A., Kuo, P.D. and Banzhaf, W. (2007). Preferential network motif generation in an artificial regulatory network model created by duplication and divergence. Advances in Complex Systems 10(2):155-172 [pdf]
- Kuo, P.D., Banzhaf, W. and Leier, A. (2006). Network topology and the evolution of dynamics in an artificial regulatory network model created by whole genome duplication and divergence. Biosystems 85(3):177-200 [preprint] [pubmed]
- Kuo, P.D. and Eliasmith, C. (2005). Integrating behavioral and neural data in a model of zebrafish network interaction. Biological Cybernetics, 93(3):178-187 [preprint] [pubmed]
- Banzhaf, W. and Kuo, P.D. (2004). Network motifs in natural and artificial transcriptional regulatory networks. Journal of Biological Physics and Chemistry, 4(2):85-92 [pdf] [publisher's version]
- Kuo, P.D. and Eliasmith, C. (2004). Understanding interactions between networks controlling distinct behaviours: Escape and swimming in larval zebrafish. Neurocomputing, 58-60:541-547 [preprint] [publisher's version]
Conference Proceedings & Other Refereed Contributions:
- Leier, A., Kuo, P.D., Banzhaf, W. and Burrrage, K. (2006). Evolving noisy oscillatory dynamics in genetic regulatory networks. In Collet, P., Tomassini, M., Ebner, M., Gustafson, S., Ekart, A., editors, Lecture Notes in Computer Science, Vol. 3905, pp. 290 - 299, Springer--Verlag [preprint] [publisher's version]
- Kuo, D. (2005). Chaos and its computing paradigm. IEEE Potentials, 424(2):13-15
- Kuo, P.D., Leier, A. and Banzhaf, W. (2004). Evolving dynamics in an artificial regulatory network model. In Yao, X., Burke, E., Lozano, J.A., Smith, J., Merelo-Guervos, J.J., Bullinaria, J.A., Rowe, J., Tino, P., Kaban, A., Schwefel, H.-P., editors, Lecture Notes in Computer Science, Vol. 3242, Springer-Verlag, pp. 571-580 [preprint] [publisher's version]
- Kuo, P.D. and Banzhaf, W. (2004). Scale-free and small world network topologies in an artificial regulatory network model. In J. Pollack, M. Bedau, P. Husbands, T. Ikegami and R. Watson, editors, Artificial Life IX: Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems, Bradford Books, USA, pp. 404-409 [preprint]
- Kuo, P.D. and Grierson, D. (2003). Genetic algorithm optimization of escape and normal swimming gaits for a hydrodynamical model of carangiform locomotion. Genetic and Evolutionary Computing Conference Late Breaking Papers, July 12th-16th, Chicago, USA. pp. 170-177 [preprint]
Workshop / Invited Presentations:
- Kuo, P.D. (2005). Experiments with an artificial regulatory network model: What can be learned about the organizing principles behind natural networks? Center for Nonlinear Dynamics in Physiology and Medicine, McGill University, February 16th, 2005, Montreal, Canada
- Kuo, P.D. (2004). Characterizing transcriptional regulatory networks: Small world & scale-free network topologies, network motifs. 5th Bluenose Numerical Analysis Day, May 28th, 2004, Wolfville, Canada
- Banzhaf, W. and Kuo, P.D. (2004). Network motifs in natural and artificial transcriptional regulatory networks. Evry Spring School on Modelling and Simulation of Biological Processes in the Context of Genomics, 2004, Evry, France
- Kuo, P.D. and Eliasmith, C. (2003). Understanding interactions between networks controlling distinct behaviours: Escape and swimming in larval zebrafish. Workshop on Unifying Neural Coding, Computation and Dynamics, Computational Neuroscience Society Conference, July 5th-9th, 2003, Alicante, Spain [pdf]
Education:
- PhD Program, Laboratory for Integrative Network Biology, Dept. of Bioengineering
University of California, San Diego, La Jolla, CA, U.S.A.
Supervisor: Trey Ideker, Assoc. Professor
- Masters of Science, Computational Science (2003-2005)
Memorial University of Newfoundland, St. John's, NL, Canada
Supervisor: Wolfgang Banzhaf, Dept. Chair, Computer Science
Thesis: Topology and Dynamics of an Artificial Genetic Regulatory Network Model- Bachelor of Applied Science, Systems Design Engineering (1998-2003)
University of Waterloo, Waterloo ON, Canada
Supervisors: Chris Eliasmith, Assoc. Professor of Philosophy & Systems Design Engineering, Donald Grierson, Professor of Civil Engineering
Option in Cognitive Science, Option in Computer Engineering
Pictures:
Postal Address:
- University of California, San Diego
- Department of Bioengineering
- 9500 Gilman Drive, Mail Code 0412
- La Jolla, CA U.S.A., 92093
E-mail(remove blanks):
pdkuo AT ucsd DOT edu
Last Updated: July 4th, 2006
