cytoscape
Class CyProject

java.lang.Object
  cytoscape.CyProject

public class CyProject

extends Object

This class is constructed from a project file, and contains string values associated with various meaningful variable names that identify the component of a CyNetwork object or various customization options. See the documentation for the readProjectFile method for the recognized file formats.

Constructor Summary

CyProject(String fileLocation)
Constructs a Project object by reading the file at the supplied location, by calling readProjectFile with the argument.

Method Summary

String	getBioDataDirectory()
boolean	getCanonicalize()
String	getDefaultLayoutStrategy()
String	getDefaultSpeciesName()
String[]	getEdgeAttributeFilenames()
String	getExpressionFilename()
String	getGeometryFilename()
String	getInteractionsFilename()
String[]	getNodeAttributeFilenames()
int	getNumberOfEdgeAttributeFiles()
int	getNumberOfNodeAttributeFiles()
String[]	getOtherArgs()
String	getProjectFilename()
String	getProjectPropsFileName()
String	getProjectVizmapPropsFileName()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CyProject

public CyProject(String fileLocation)

Constructs a Project object by reading the file at the supplied location, by calling readProjectFile with the argument.

Method Detail

getProjectFilename

public String getProjectFilename()

getInteractionsFilename

public String getInteractionsFilename()

getGeometryFilename

public String getGeometryFilename()

getExpressionFilename

public String getExpressionFilename()

getNumberOfNodeAttributeFiles

public int getNumberOfNodeAttributeFiles()

getNumberOfEdgeAttributeFiles

public int getNumberOfEdgeAttributeFiles()

getNodeAttributeFilenames

public String[] getNodeAttributeFilenames()

getEdgeAttributeFilenames

public String[] getEdgeAttributeFilenames()

getBioDataDirectory

public String getBioDataDirectory()

getDefaultSpeciesName

public String getDefaultSpeciesName()

getDefaultLayoutStrategy

public String getDefaultLayoutStrategy()

getProjectPropsFileName

public String getProjectPropsFileName()

getProjectVizmapPropsFileName

public String getProjectVizmapPropsFileName()

getCanonicalize

public boolean getCanonicalize()

getOtherArgs

public String[] getOtherArgs()