cytoscape
Class CytoscapeObj

java.lang.Object
  cytoscape.CytoscapeObj

public class CytoscapeObj

extends Object

Constructor Summary

CytoscapeObj()

Method Summary

BioDataServer	getBioDataServer() Returns the (possibly null) bioDataServer.
CytoscapeConfig	getConfiguration()
File	getCurrentDirectory() Deprecated. As of Cytoscape 2.1, replaced by CytoscapeInit.getMRUD();
int	getViewThreshold() Deprecated. As of Cytoscape 2.1, replaced by CytoscapeInit.getViewThreshold();
void	setCurrentDirectory(File mrud) Deprecated. As of Cytoscape 2.1, replaced by CytoscapeInit.getMRUD();
void	setViewThreshold(int threshold) Deprecated. As of Cytoscape 2.1, replaced by CytoscapeInit.setViewThreshold(int);

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CytoscapeObj

public CytoscapeObj()

Method Detail

getBioDataServer

public BioDataServer getBioDataServer()

Returns the (possibly null) bioDataServer.

See Also:

BioDataServer

getConfiguration

public CytoscapeConfig getConfiguration()

getViewThreshold

public int getViewThreshold()

Deprecated. As of Cytoscape 2.1, replaced by CytoscapeInit.getViewThreshold();

Get the view threshold.

Returns:

The view threshold

setViewThreshold

public void setViewThreshold(int threshold)

Deprecated. As of Cytoscape 2.1, replaced by CytoscapeInit.setViewThreshold(int);

Set the view threshold.

getCurrentDirectory

public File getCurrentDirectory()

Deprecated. As of Cytoscape 2.1, replaced by CytoscapeInit.getMRUD();

Get the current directory.

Returns:

The startup directory if a user has not chosen another via a load or save operation, else returns the last user chosen directory

setCurrentDirectory

public void setCurrentDirectory(File mrud)

Deprecated. As of Cytoscape 2.1, replaced by CytoscapeInit.getMRUD();

Set the current directory