cytoscape.view
Interface CyNetworkView

All Superinterfaces:

GraphView

public interface CyNetworkView

extends GraphView

CyNetworkView is responsible for actually getting a graph to show up on the screen.

Cytoscape does not currently define specific classes for NodeViews and EdgeViews, the deafults from the GINY graph library ( namely phoebe.PNodeView and phoebe.PEdgeView ) are most commonly used. Making custom nodes is easy and fun. One must implement the giny.view.NodeView interface and inherit from edu.umd.cs.piccolo.PNode. The Piccolo project is what all of the paiting is based on, and is very fast, flexable and powerful. Becoming acquainted with Piccolo is essential for build custom nodes.

Fortunately, if you just want basic shapes and colors, it's all built into the UI already, and you really need never even use this class. Just learn how to use the VizMapper to acclompish your data to view mappings. The manual is a good place to start.

Field Summary

Fields inherited from interface giny.view.GraphView

EDGE_LINE_TYPE, EDGE_PAINT, EDGE_SELECTION_PAINT, EDGE_SOURCE_END_PAINT, EDGE_SOURCE_END_SELECTED_PAINT, EDGE_SOURCE_END_TYPE, EDGE_TARGET_END_PAINT, EDGE_TARGET_END_SELECTED_PAINT, EDGE_TARGET_END_TYPE, EDGE_WIDTH, NODE_BORDER_PAINT, NODE_BORDER_WIDTH, NODE_HEIGHT, NODE_LABEL, NODE_PAINT, NODE_SELECTION_PAINT, NODE_SHAPE, NODE_WIDTH, NODE_X_POSITION, NODE_Y_POSITION, NODE_Z_POSITION, SOURCE_INDEX, TARGET_INDEX

Method Summary

void	applyLayout(LayoutAlgorithm layout) Applies the given layout to the entire CyNetworkView
void	applyLayout(LayoutAlgorithm layout, CyNode[] nodes, CyEdge[] edges) Applies the given layout to only the given Nodes and Edges
void	applyLayout(LayoutAlgorithm layout, cytoscape.view.CyNodeView[] nodes, cytoscape.view.CyEdgeView[] edges) Applies the given layout to only the given NodeViews and EdgeViews
void	applyLayout(LayoutAlgorithm layout, int[] nodes, int[] edges) Applies the given layout to only the given Nodes and Edges
void	applyLockedLayout(LayoutAlgorithm layout, CyNode[] nodes, CyEdge[] edges) Applies the given layout to the entire CyNetworkView, but locks the given Nodes and Edges in place
void	applyLockedLayout(LayoutAlgorithm layout, cytoscape.view.CyNodeView[] nodes, cytoscape.view.CyEdgeView[] edges) Applies the given layout to the entire CyNetworkView, but locks the given NodeViews and EdgeViews in place
void	applyLockedLayout(LayoutAlgorithm layout, int[] nodes, int[] edges) Applies the given layout to the entire CyNetworkView, but locks the given Nodes and Edges in place
boolean	applyVizMap(CyEdge edge) Applies the given edge to the given vizmapper
boolean	applyVizMap(CyEdge edge, VisualStyle style) Applies the given edge to the given vizmapper
boolean	applyVizMap(CyNode node) Applies the given node to the given vizmapper
boolean	applyVizMap(CyNode node, VisualStyle style) Applies the given node to the given vizmapper
boolean	applyVizMap(EdgeView edge_view) Applies the given edge to the given vizmapper
boolean	applyVizMap(EdgeView edge_view, VisualStyle style) Applies the given edge to the given vizmapper
boolean	applyVizMap(NodeView node_view) Applies the given node to the given vizmapper
boolean	applyVizMap(NodeView node_view, VisualStyle style) Applies the given node to the given vizmapper
void	applyVizmapper(VisualStyle style)
Object	getClientData(String data_name) Get Some client data
Collection	getClientDataNames() Get a list of all currently available ClientData objects
CyNetwork	getNetwork() Returns the network displayed by this object.
String	getTitle() Returns the Title of this View
CyNetworkView	getView()
boolean	getVisualMapperEnabled()
VisualMappingManager	getVizMapManager()
cytoscape.visual.ui.VizMapUI	getVizMapUI()
void	putClientData(String data_name, Object data) Networks can support client data.
void	redrawGraph(boolean layout, boolean vizmap)
boolean	setSelected(CyEdge[] edges) Sets the Given edges Selected
boolean	setSelected(CyNode[] nodes) Sets the Given nodes Selected
boolean	setSelected(EdgeView[] edge_views) Sets the Given edges Selected
boolean	setSelected(NodeView[] node_views) Sets the Given nodes Selected
void	setTitle(String title) Sets the Title of this View
void	setVisualMapperEnabled(boolean state)
void	toggleVisualMapperEnabled()

Methods inherited from interface giny.view.GraphView

addContextMethod, addEdgeView, addEdgeView, addGraphViewChangeListener, addNodeView, addNodeView, addNodeView, disableEdgeSelection, disableNodeSelection, edgeCount, edgeSelectionEnabled, enableEdgeSelection, enableNodeSelection, fitContent, getAllEdgePropertyData, getAllNodePropertyData, getBackgroundPaint, getComponent, getContextMethods, getContextMethods, getEdgeBooleanProperty, getEdgeDoubleProperty, getEdgeFloatProperty, getEdgeIntProperty, getEdgeObjectProperty, getEdgeView, getEdgeView, getEdgeViewCount, getEdgeViewsIterator, getEdgeViewsList, getEdgeViewsList, getEdgeViewsList, getGraphPerspective, getIdentifier, getNodeBooleanProperty, getNodeDoubleProperty, getNodeFloatProperty, getNodeIntProperty, getNodeObjectProperty, getNodeView, getNodeView, getNodeViewCount, getNodeViewsIterator, getRootGraph, getSelectedEdgeIndices, getSelectedEdges, getSelectedNodeIndices, getSelectedNodes, getZoom, hideGraphObject, hideGraphObjects, nodeCount, nodeSelectionEnabled, removeEdgeView, removeEdgeView, removeEdgeView, removeGraphViewChangeListener, removeNodeView, removeNodeView, removeNodeView, setAllEdgePropertyData, setAllNodePropertyData, setBackgroundPaint, setEdgeBooleanProperty, setEdgeDoubleProperty, setEdgeFloatProperty, setEdgeIntProperty, setEdgeObjectProperty, setIdentifier, setNodeBooleanProperty, setNodeDoubleProperty, setNodeFloatProperty, setNodeIntProperty, setNodeObjectProperty, setZoom, showGraphObject, showGraphObjects, updateView

Method Detail

getNetwork

public CyNetwork getNetwork()

Returns the network displayed by this object.

setTitle

public void setTitle(String title)

Sets the Title of this View

getTitle

public String getTitle()

Returns the Title of this View

redrawGraph

public void redrawGraph(boolean layout,
                        boolean vizmap)

getView

public CyNetworkView getView()

getVizMapManager

public VisualMappingManager getVizMapManager()

getVizMapUI

public cytoscape.visual.ui.VizMapUI getVizMapUI()

toggleVisualMapperEnabled

public void toggleVisualMapperEnabled()

setVisualMapperEnabled

public void setVisualMapperEnabled(boolean state)

getVisualMapperEnabled

public boolean getVisualMapperEnabled()

putClientData

public void putClientData(String data_name,
                          Object data)

Networks can support client data.

Parameters:

data_name - the name of this client data

getClientDataNames

public Collection getClientDataNames()

Get a list of all currently available ClientData objects

getClientData

public Object getClientData(String data_name)

Get Some client data

Parameters:

data_name - the data to get

setSelected

public boolean setSelected(CyNode[] nodes)

Sets the Given nodes Selected

setSelected

public boolean setSelected(NodeView[] node_views)

Sets the Given nodes Selected

applyVizMap

public boolean applyVizMap(CyEdge edge)

Applies the given edge to the given vizmapper

applyVizMap

public boolean applyVizMap(EdgeView edge_view)

Applies the given edge to the given vizmapper

applyVizMap

public boolean applyVizMap(CyNode node)

Applies the given node to the given vizmapper

applyVizMap

public boolean applyVizMap(NodeView node_view)

Applies the given node to the given vizmapper

applyVizMap

public boolean applyVizMap(CyEdge edge,
                           VisualStyle style)

Applies the given edge to the given vizmapper

applyVizMap

public boolean applyVizMap(EdgeView edge_view,
                           VisualStyle style)

Applies the given edge to the given vizmapper

applyVizMap

public boolean applyVizMap(CyNode node,
                           VisualStyle style)

Applies the given node to the given vizmapper

applyVizMap

public boolean applyVizMap(NodeView node_view,
                           VisualStyle style)

Applies the given node to the given vizmapper

setSelected

public boolean setSelected(CyEdge[] edges)

Sets the Given edges Selected

setSelected

public boolean setSelected(EdgeView[] edge_views)

Sets the Given edges Selected

applyVizmapper

public void applyVizmapper(VisualStyle style)

applyLayout

public void applyLayout(LayoutAlgorithm layout)

Applies the given layout to the entire CyNetworkView

applyLockedLayout

public void applyLockedLayout(LayoutAlgorithm layout,
                              CyNode[] nodes,
                              CyEdge[] edges)

Applies the given layout to the entire CyNetworkView, but locks the given Nodes and Edges in place

applyLayout

public void applyLayout(LayoutAlgorithm layout,
                        CyNode[] nodes,
                        CyEdge[] edges)

Applies the given layout to only the given Nodes and Edges

applyLockedLayout

public void applyLockedLayout(LayoutAlgorithm layout,
                              cytoscape.view.CyNodeView[] nodes,
                              cytoscape.view.CyEdgeView[] edges)

Applies the given layout to the entire CyNetworkView, but locks the given NodeViews and EdgeViews in place

applyLayout

public void applyLayout(LayoutAlgorithm layout,
                        cytoscape.view.CyNodeView[] nodes,
                        cytoscape.view.CyEdgeView[] edges)

Applies the given layout to only the given NodeViews and EdgeViews

applyLockedLayout

public void applyLockedLayout(LayoutAlgorithm layout,
                              int[] nodes,
                              int[] edges)

Applies the given layout to the entire CyNetworkView, but locks the given Nodes and Edges in place

applyLayout

public void applyLayout(LayoutAlgorithm layout,
                        int[] nodes,
                        int[] edges)

Applies the given layout to only the given Nodes and Edges