Package cytoscape.actions

UI classes that are attached to menu items in the menu or tool bar of the window.

See:
Description

Class Summary

AlignHorizontalAction
AlignVerticalAction
AlphabeticalSelectionAction
AnimatedLayoutAction
BackgroundColorAction	Prompts User for New Background Color.
BirdsEyeViewAction
CheckBoxFileChooser	extends JFileChooser by adding a JCheckBox at the bottom of the chooser
CloneGraphInNewWindowAction
CreateNetworkViewAction
CytoPanelAction	Menu item handler for CytoPanels
DeleteSelectedAction	Giny version of the original class.
DeselectAllAction
DeSelectAllEdgesAction
DeSelectAllNodesAction
DestroyNetworkAction
DestroyNetworkViewAction
DestroySelectedAction
EdgeManipulationAction
ExitAction
ExpFileChooser	extends JFileChooser in the following way: adds a JCheckBox at the bottom of the chooser, asking whether to copy expression data to attributes.
ExportAction
ExportAsGMLAction
ExportAsGraphicsAction
ExportAsInteractionsAction	write out the current graph to the specified file, using the standard interactions format: nodeA edgeType nodeB.
ExportAsXGMMLAction	This action is for exporting network and attributes in XGMML file.
ExportEdgeAttributesAction
ExportNodeAttributesAction
ExportVizmapAction
FitContentAction
GinyUtils	Utility operations for selection and hiding/unhiding nodes and edges in a Giny GraphView.
GraphObjectSelectionAction
HelpAboutAction
HideSelectedAction
HideSelectedEdgesAction
HideSelectedNodesAction
ImportBioDataServerAction	Action allows the loading of a BioDataServer from the gui.
ImportEdgeAttributesAction
ImportExpressionMatrixAction	User has requested loading of an Expression Matrix File.
ImportGraphFileAction	User has requested loading of an Expression Matrix File.
ImportNodeAttributesAction
ImportVizmapAction
InvertSelectedEdgesAction
InvertSelectedNodesAction
LayoutAction
ListFromFileSelectionAction
MapOntologyAction
NewSessionAction
NewWindowSelectedNodesEdgesAction
NewWindowSelectedNodesOnlyAction
OpenSessionAction	Open session file.
PreferenceAction
PrintAction
RotateSelectedNodesAction	Rotates the given selection by the specified amount.
SaveSessionAction
SaveSessionAsAction	"Save Session As" Action -- Same as SaveSessionAction, but always opens file chooser.
SelectAllAction
SelectAllEdgesAction
SelectAllNodesAction
SelectFirstNeighborsAction	select every first neighbor (directly connected nodes) of the currently selected nodes.
SelectionModeAction
SetVisualPropertiesAction
ShowAllAction
SquiggleAction
ToggleVisualMapperAction	This class implements two menu items that allow enabling and disabling the visual mapper.
UnHideSelectedAction
UnHideSelectedEdgesAction
UnHideSelectedNodesAction
ZoomAction
ZoomSelectedAction

Package cytoscape.actions Description

UI classes that are attached to menu items in the menu or tool bar of the window. These classes are usually short and delegate to other objects to do the actual work.