cytoscape.data.annotation.readers
Class AnnotationFlatFileReader

java.lang.Object
  cytoscape.data.annotation.readers.AnnotationFlatFileReader

public class AnnotationFlatFileReader
extends Object

Constructor Summary

AnnotationFlatFileReader(BufferedReader rd, Thesaurus th, boolean isFlip)

AnnotationFlatFileReader(File file)

AnnotationFlatFileReader(String filename, Thesaurus th)

Method Summary

Annotation	getAnnotation()
void	parseHeader(String firstLine)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnnotationFlatFileReader

public AnnotationFlatFileReader(File file)
                         throws Exception

Throws:

Exception

AnnotationFlatFileReader

public AnnotationFlatFileReader(BufferedReader rd,
                                Thesaurus th,
                                boolean isFlip)
                         throws Exception

Throws:

Exception

AnnotationFlatFileReader

public AnnotationFlatFileReader(String filename,
                                Thesaurus th)
                         throws Exception

Throws:

Exception

Method Detail

parseHeader

public void parseHeader(String firstLine)
                 throws Exception

Throws:

Exception

getAnnotation

public Annotation getAnnotation()