Constant Field Values

Contents

• cytoscape.*

cytoscape.*

cytoscape.CyNetworkEvent

public static final int	BEGIN	0
public static final int	END	1
public static final int	GRAPH_REPLACED	10
public static final int	UNKNOWN	-1

cytoscape.Cytoscape

public static final String	NETWORK_LOADED	"NETWORK_LOADED"
public static final String	NETWORK_MODIFIED	"NETWORK_MODIFIED"
public static final String	NETWORK_SAVED	"NETWORK_SAVED"
public static final String	PREFERENCE_MODIFIED	"PREFERENCE_MODIFIED"
public static final String	PREFERENCES_UPDATED	"PREFERENCES_UPDATED"
public static final String	READER_CLIENT_KEY	"reader_client_key"
public static final int	SELECT_EDGES_ONLY	2
public static final int	SELECT_NODES_AND_EDGES	3
public static final int	SELECT_NODES_ONLY	1
public static final int	SESSION_CHANGED	2
public static final int	SESSION_CLOSED	3
public static final int	SESSION_NEW	0
public static final int	SESSION_OPENED	1

cytoscape.CytoscapeModifiedNetworkManager

public static final String	CLEAN	"Clean"
public static final String	MODIFIED	"Modified"

cytoscape.data.CyAttributes

public static final byte	TYPE_BOOLEAN	1
public static final byte	TYPE_COMPLEX	-4
public static final byte	TYPE_FLOATING	2
public static final byte	TYPE_INTEGER	3
public static final byte	TYPE_SIMPLE_LIST	-2
public static final byte	TYPE_SIMPLE_MAP	-3
public static final byte	TYPE_STRING	4
public static final byte	TYPE_UNDEFINED	-1

cytoscape.data.ExpressionData

public static final int	LAMBDA	1
public static final int	MAX_LINE_SIZE	8192
public static final int	NONE	2
public static final int	PVAL	0
public static final int	UNKNOWN	3

cytoscape.data.Semantics

public static final String	ALIASES	"aliases"
public static final String	BIOLOGICAL_PROCESS	"biological_process"
public static final String	CANONICAL_NAME	"canonicalName"
public static final String	CELLULAR_COMPONENT	"cellular_component"
public static final String	COMMON_NAME	"commonName"
public static final String	DNA	"DNA"
public static final String	GO_ALIASES	"GO Aliases"
public static final String	GO_COMMON_NAME	"GO Common Name"
public static final String	IDENTIFIER	"identifier"
public static final String	INTERACTION	"interaction"
public static final String	LABEL	"label"
public static final String	MOLECULAR_FUNCTION	"molecular_function"
public static final String	MOLECULE_TYPE	"molecule_type"
public static final String	PROTEIN	"protein"
public static final String	RNA	"RNA"
public static final String	SPECIES	"species"

cytoscape.data.attr.MultiHashMapDefinition

public static final byte	TYPE_BOOLEAN	1
public static final byte	TYPE_FLOATING_POINT	2
public static final byte	TYPE_INTEGER	3
public static final byte	TYPE_STRING	4

cytoscape.layout.AttributeLayout

public static final int	CLEAR_OBJECTS	2
public static final int	CREATE_EDGES	1
public static final int	DO_LAYOUT	0

cytoscape.util.CytoscapeMenuBar

public static final String

DEFAULT_MENU_SPECIFIER

"Tools"

cytoscape.util.CytoscapeProgressMonitor

public static final int

ONE_SECOND

1000

cytoscape.util.FileUtil

public static final String

urlPattern

"^(jar\\:)?(\\w+\\:\\/+\\S+)(\\!\\/\\S*)?$"

cytoscape.util.ZipUtil

public static final int

DEF_COMPRESSION_LEVEL

1

cytoscape.view.CytoscapeDesktop

public static final int	EXTERNAL_VIEW	2
public static final int	INTERNAL_VIEW	1
public static final String	NETWORK_VIEW_CREATED	"NETWORK_VIEW_CREATED"
public static final String	NETWORK_VIEW_DESTROYED	"NETWORK_VIEW_DESTROYED"
public static final String	NETWORK_VIEW_FOCUS	"NETWORK_VIEW_FOCUS"
public static final String	NETWORK_VIEW_FOCUSED	"NETWORK_VIEW_FOCUSED"
public static final int	TABBED_VIEW	0
public static final String	VISUAL_STYLE	"VISUAL_STYLE"
public static final String	VIZMAP_ENABLED	"VIZMAP_ENABLED"

cytoscape.view.cytopanels.BiModalJSplitPane

public static final int	MODE_HIDE_SPLIT	2
public static final String	MODE_PROPERTY	"MODE_PROPERTY"
public static final int	MODE_SHOW_SPLIT	1