Packages |
cytoscape |
Core Cytoscape Classes. |
cytoscape.actions |
UI classes that are attached to menu items in the menu or tool bar
of the window. |
cytoscape.data |
Basic data classes used by Cytoscape. |
cytoscape.data.annotation |
Classes used to represent generic annotation data in Cytoscape. |
cytoscape.data.annotation.readers |
Reader classes for generic annotation data. |
cytoscape.data.attr |
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cytoscape.data.attr.util |
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cytoscape.data.ontology |
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cytoscape.data.ontology.readers |
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cytoscape.data.readers |
Reader classes for the basic data types in cytoscape.data. |
cytoscape.data.servers |
An interface for annotation data providers and various implementations
of that interface, including both remote and in-process implementations. |
cytoscape.data.servers.ui |
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cytoscape.data.synonyms |
Classes providing synonym funcationality, that is identifying multiple
names that refer to the same entity. |
cytoscape.data.synonyms.readers |
Readers for classes in the cytoscape.data.synonyms package. |
cytoscape.data.writers |
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cytoscape.dialogs |
UI classes for performing some action, generally more complicated than
those contained in the cytoscape.actions package. |
cytoscape.dialogs.preferences |
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cytoscape.ding |
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cytoscape.giny |
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cytoscape.init |
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cytoscape.layout |
Classes providing some kind of graph layout functionality. |
cytoscape.plugin |
Classes related to Cytoscape plugins. |
cytoscape.util |
This package contains utility classes which are deemed generally useful,
but which do not clearly belong to any other package. |
cytoscape.util.shadegrown |
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cytoscape.util.swing |
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cytoscape.view |
Classes that provide a window to display a graph and UI components
connected to that window, such as the menus. |
cytoscape.view.cytopanels |
CytoPanels Framework. |
cytoscape.visual |
Framework for generalized mappings from graph attributes
to visual attributes. |
cytoscape.visual.calculators |
Objects that calculate from the data attributes the value for one
visual attribute, such as color, shape, or size. |
cytoscape.visual.mappings |
The Mappings are used by Calculators to map graph attributes
to visual attribute values. |
cytoscape.visual.mappings.continuous |
Mappings from a continuous numerical input to a particular visual attribute. |
cytoscape.visual.mappings.discrete |
Mappings from a discrete-valued input to a particular visual attribute. |
cytoscape.visual.parsers |
Translates visual attribute values to and from their String representation. |
cytoscape.visual.ui |
Top-level UI components for the cytoscape.visual package. |