cytoscape
Class CyMain

java.lang.Object
  cytoscape.CyMain

All Implemented Interfaces:

CyInitParams

public class CyMain
extends Object
implements CyInitParams

This is the main startup class for Cytoscape. This parses the command line and implements CyInitParams so that it can be used to initialize cytoscape.

Look and Feel is modified for jgoodies 2.1.4 by Kei Ono

Field Summary

Fields inherited from interface cytoscape.init.CyInitParams

EMBEDDED_WINDOW, ERROR, GUI, LIBRARY, TEXT

Constructor Summary

CyMain(String[] args)
Creates a new CyMain object.

Method Summary

String[]	getArgs() DOCUMENT ME!
List	getEdgeAttributeFiles() DOCUMENT ME!
List	getExpressionFiles() DOCUMENT ME!
List	getGraphFiles() DOCUMENT ME!
int	getMode() DOCUMENT ME!
List	getNodeAttributeFiles() DOCUMENT ME!
List	getPlugins() DOCUMENT ME!
Properties	getProps() DOCUMENT ME!
String	getSessionFile() DOCUMENT ME!
Properties	getVizProps() DOCUMENT ME!
static void	main(String[] args) DOCUMENT ME!

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CyMain

public CyMain(String[] args)
       throws Exception

Creates a new CyMain object.

Parameters:

args - DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

Method Detail

main

public static void main(String[] args)
                 throws Exception

DOCUMENT ME!

Parameters:

args - DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

getProps

public Properties getProps()

DOCUMENT ME!

Specified by:

getProps in interface CyInitParams

Returns:

DOCUMENT ME!

getVizProps

public Properties getVizProps()

DOCUMENT ME!

Specified by:

getVizProps in interface CyInitParams

Returns:

DOCUMENT ME!

getGraphFiles

public List getGraphFiles()

DOCUMENT ME!

Specified by:

getGraphFiles in interface CyInitParams

Returns:

DOCUMENT ME!

getEdgeAttributeFiles

public List getEdgeAttributeFiles()

DOCUMENT ME!

Specified by:

getEdgeAttributeFiles in interface CyInitParams

Returns:

DOCUMENT ME!

getNodeAttributeFiles

public List getNodeAttributeFiles()

DOCUMENT ME!

Specified by:

getNodeAttributeFiles in interface CyInitParams

Returns:

DOCUMENT ME!

getExpressionFiles

public List getExpressionFiles()

DOCUMENT ME!

Specified by:

getExpressionFiles in interface CyInitParams

Returns:

DOCUMENT ME!

getPlugins

public List getPlugins()

DOCUMENT ME!

Specified by:

getPlugins in interface CyInitParams

Returns:

DOCUMENT ME!

getSessionFile

public String getSessionFile()

DOCUMENT ME!

Specified by:

getSessionFile in interface CyInitParams

Returns:

DOCUMENT ME!

getMode

public int getMode()

DOCUMENT ME!

Specified by:

getMode in interface CyInitParams

Returns:

DOCUMENT ME!

getArgs

public String[] getArgs()

DOCUMENT ME!

Specified by:

getArgs in interface CyInitParams

Returns:

DOCUMENT ME!