Index (Cytoscape 2.5.2 API)

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aboutToDisplayPanel() - Method in class cytoscape.data.servers.ui.AnotationPanelDescriptor: DOCUMENT ME!
aboutToDisplayPanel() - Method in class cytoscape.data.servers.ui.ManifestFileSelectionPanelDescriptor: DOCUMENT ME!
aboutToDisplayPanel() - Method in class cytoscape.data.servers.ui.OboPanelDescriptor: DOCUMENT ME!
aboutToDisplayPanel() - Method in class cytoscape.data.servers.ui.SpeciesPanelDescriptor: DOCUMENT ME!
aboutToHidePanel() - Method in class cytoscape.data.servers.ui.ManifestFileSelectionPanelDescriptor: DOCUMENT ME!
AbstractCalculator - Class in cytoscape.visual.calculators: AbstractCalculator is the top of the tree for the Calculator classes.
AbstractCalculator(String, ObjectMapping, Class) - Constructor for class cytoscape.visual.calculators.AbstractCalculator: Deprecated.
AbstractCalculator(String, ObjectMapping, VisualPropertyType) - Constructor for class cytoscape.visual.calculators.AbstractCalculator: Creates a new AbstractCalculator object.
AbstractCellEditor - Class in cytoscape.util.swing
AbstractCellEditor() - Constructor for class cytoscape.util.swing.AbstractCellEditor
AbstractGraphReader - Class in cytoscape.data.readers
AbstractGraphReader(String) - Constructor for class cytoscape.data.readers.AbstractGraphReader: Creates a new AbstractGraphReader object.
AbstractLayout - Class in cytoscape.layout: The AbstractLayout provides nice starting point for Layouts written for Cytoscape.
AbstractLayout() - Constructor for class cytoscape.layout.AbstractLayout: The Constructor is null
AbstractTreeTableModel - Class in cytoscape.util.swing
AbstractTreeTableModel(Object) - Constructor for class cytoscape.util.swing.AbstractTreeTableModel: Creates a new AbstractTreeTableModel object.
AbstractVisualProperty - Class in cytoscape.visual.properties
AbstractVisualProperty() - Constructor for class cytoscape.visual.properties.AbstractVisualProperty
accept(File) - Method in class cytoscape.util.CyFileFilter: Returns true if this class is capable of processing the specified file.
accept(File, String) - Method in class cytoscape.util.CyFileFilter: Returns true if this class is capable of processing the specified file.
accept(String) - Method in class cytoscape.util.CyFileFilter: Returns true if this class is capable of processing the specified file.
accept(File) - Method in class cytoscape.util.XGMMLFileFilter: Indicates which files the XGMMLFileFilter accepts.
actionHelp() - Method in class cytoscape.util.CytoscapeAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.AlignHorizontalAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.AlignVerticalAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.AlphabeticalSelectionAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.AnimatedLayoutAction: Deprecated. DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.BackgroundColorAction: Deprecated. Captures User Menu Selection.
actionPerformed(ActionEvent) - Method in class cytoscape.actions.BendSelectedEdgesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.BirdsEyeViewAction: Deprecated. DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.BookmarkAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.CloneGraphInNewWindowAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.CreateNetworkViewAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.CytoPanelAction: Toggles the cytopanel state.
actionPerformed(ActionEvent) - Method in class cytoscape.actions.DeselectAllAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.DeSelectAllEdgesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.DeSelectAllNodesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.DestroyNetworkAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.DestroyNetworkViewAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.EdgeManipulationAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ExitAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ExportAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ExportAsGMLAction: User-initiated action to save the current network in GML format to a user-specified file.
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ExportAsGraphicsAction
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ExportAsInteractionsAction: User-initiated action to save the current network in SIF format to a user-specified file.
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ExportAsXGMMLAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ExportEdgeAttributesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ExportNodeAttributesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ExportVizmapAction: Get file name and execute the saving task
actionPerformed(ActionEvent) - Method in class cytoscape.actions.FitContentAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.GraphObjectSelectionAction: This Should go away
actionPerformed(ActionEvent) - Method in class cytoscape.actions.HelpAboutAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.HelpContactHelpDeskAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.HelpContentsAction: Merely calls actionPerformed on the CSH.DisplayHelpFromSource object.
actionPerformed(ActionEvent) - Method in class cytoscape.actions.HideSelectedAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.HideSelectedEdgesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.HideSelectedNodesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ImportBioDataServerAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ImportEdgeAttributesAction: User Initiated Request.
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ImportExpressionMatrixAction: User Initiated Request.
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ImportGraphFileAction: User-initiated action to load a CyNetwork into Cytoscape.
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ImportNodeAttributesAction: User Initiated Request.
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ImportVizmapAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.InvertSelectedEdgesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.InvertSelectedNodesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ListFromFileSelectionAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.MapOntologyAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.NewSessionAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.NewWindowSelectedNodesEdgesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.NewWindowSelectedNodesOnlyAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.OpenSessionAction: Clear current session and open the cys file.
actionPerformed(ActionEvent) - Method in class cytoscape.actions.PluginManagerAction: Gets the lists of plugins and creates the ManagerDialog for users.
actionPerformed(ActionEvent) - Method in class cytoscape.actions.PluginUpdateAction
actionPerformed(ActionEvent) - Method in class cytoscape.actions.PreferenceAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.PrintAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ProxyServerAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.RotateSelectedNodesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.SaveSessionAction: If no current session file exists, open dialog box to ask user a new session file name, otherwise, overwrite the file.
actionPerformed(ActionEvent) - Method in class cytoscape.actions.SaveSessionAsAction: If no current session file exists, open dialog box to save new session, and if it exists, overwrite the file.
actionPerformed(ActionEvent) - Method in class cytoscape.actions.SelectAllAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.SelectAllEdgesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.SelectAllNodesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.SelectFirstNeighborsAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.SetVisualPropertiesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ShowAllAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.StraightenSelectedEdgesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ToggleVisualMapperAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.UnHideSelectedAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.UnHideSelectedEdgesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.UnHideSelectedNodesAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ZoomAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.actions.ZoomSelectedAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.data.annotation.AnnotationGui: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.data.servers.ui.AnotationPanelDescriptor: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.data.servers.ui.ManifestFileSelectionPanelDescriptor: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.data.servers.ui.OboPanelDescriptor: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.EditNetworkTitleDialog: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.ExpressionDataPopupTable.OKAction
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.GinyEdgeControlDialog.OKAction
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.GraphObjectSelection: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.IconPopupButton: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.IconPopupButton.ApplyIconAction
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.IconPopupButton.CancelIconAction
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.ImportNetworkDialog: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.LabelTextPanel.BoxAction
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.NewSlider.MJTextField
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.NewStringPopupDialog.CancelAction
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.NewStringPopupDialog.OkAction
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.plugins.PluginManageDialog
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.PopupTextArea.OKAction
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.preferences.BookmarkDialog: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.preferences.BookmarkDialog.EditBookmarkDialog
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.preferences.ProxyServerDialog: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.ShrinkExpandGraph: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.URLimportAdvancedDialog: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.dialogs.URLimportAdvancedDialog.BookmarkDialog
actionPerformed(ActionEvent) - Method in class cytoscape.layout.ui.LayoutSettingsDialog: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.layout.ui.SettingsAction
actionPerformed(ActionEvent) - Method in class cytoscape.layout.ui.StaticLayoutMenu: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.util.CytoscapeAction: DOCUMENT ME!
actionPerformed(ActionEvent) - Method in class cytoscape.util.undo.RedoAction: Tries to run redo() on the top edit of the edit stack.
actionPerformed(ActionEvent) - Method in class cytoscape.util.undo.UndoAction: Tries to run undo() on the top edit of the edit stack.
actionPerformed(ActionEvent) - Method in class cytoscape.visual.mappings.continuous.AddPointListener: User Initiated Action.
actionPerformed(ActionEvent) - Method in class cytoscape.visual.mappings.continuous.ContinuousUI: Deprecated. Apply Changes.
actionPerformed(ActionEvent) - Method in class cytoscape.visual.mappings.continuous.DeletePointListener: User Initiated Action.
actionPerformed(ActionEvent) - Method in class cytoscape.visual.mappings.discrete.RandomColorListener: User wants to Seed the Discrete Mapper with Random Color Values.
actionPerformed(ActionEvent) - Method in class cytoscape.visual.ui.PopupIconChooser.ApplyIconAction
actionPerformed(ActionEvent) - Method in class cytoscape.visual.ui.PopupIconChooser.CancelIconAction
activate() - Method in class cytoscape.plugin.CytoscapePlugin: If implemented, then this plugin will be activated after being initialized
add(String, int) - Method in class cytoscape.data.annotation.Annotation: create a new annotation for an entity (typically a gene) of the current species and with respect to the current ontology. an entity may have more than one classification.
add(OntologyTerm) - Method in class cytoscape.data.annotation.Ontology: DOCUMENT ME!
add(OntologyTerm) - Method in class cytoscape.data.ontology.Ontology: Add a new ontology term to the DAG.
add(String, String) - Method in class cytoscape.data.synonyms.Aliases: Add new alias for an object.
add(String, List<String>) - Method in class cytoscape.data.synonyms.Aliases: Add list of aliases to the existing alias lists.
add(String, String) - Method in class cytoscape.data.synonyms.Thesaurus: DOCUMENT ME!
add(Tunable) - Method in class cytoscape.layout.LayoutProperties: This method is used to add a new Tunable to the LayoutProperties list.
add(CyLayoutAlgorithm) - Method in class cytoscape.layout.ui.LayoutMenu: DOCUMENT ME!
add(Component) - Method in interface cytoscape.view.cytopanels.CytoPanel: Adds a component to the CytoPanel.
add(Component, int) - Method in interface cytoscape.view.cytopanels.CytoPanel: Adds a component to the CytoPanel at specified index.
add(String, Component) - Method in interface cytoscape.view.cytopanels.CytoPanel: Adds a component to the CytoPanel with a specified title.
add(String, Icon, Component) - Method in interface cytoscape.view.cytopanels.CytoPanel: Adds a component to the CytoPanel with specified title and icon.
add(String, Icon, Component, String) - Method in interface cytoscape.view.cytopanels.CytoPanel: Adds a component to the CytoPanel with specified title, icon, and tool tip.
add(Component) - Method in class cytoscape.view.cytopanels.CytoPanelImp: Adds a component to the CytoPanel.
add(Component, int) - Method in class cytoscape.view.cytopanels.CytoPanelImp: Adds a component to the CytoPanel at specified index.
add(String, Component) - Method in class cytoscape.view.cytopanels.CytoPanelImp: Adds a component to the CytoPanel with a specified title.
add(String, Icon, Component) - Method in class cytoscape.view.cytopanels.CytoPanelImp: Adds a component to the CytoPanel with specified title and icon.
add(String, Icon, Component, String) - Method in class cytoscape.view.cytopanels.CytoPanelImp: Adds a component to the CytoPanel with specified title, icon, and tool tip.
addAction(Action) - Method in class cytoscape.util.CytoscapeMenuBar: If the given Action has a present and false inMenuBar property, return; otherwise delegate to addAction( String, Action ) with the value of its preferredMenu property, or null if it does not have that property.
addAction(Action, int) - Method in class cytoscape.util.CytoscapeMenuBar: DOCUMENT ME!
addAction(String, Action) - Method in class cytoscape.util.CytoscapeMenuBar: DOCUMENT ME!
addAction(Action) - Method in class cytoscape.util.CytoscapeToolBar: If the given Action has an absent or false inToolBar property, return; otherwise delegate to addAction( String, Action ) with the value of its preferredButtonGroup property, or null if it does not have that property.
addAction(String, Action) - Method in class cytoscape.util.CytoscapeToolBar: Note that this presently ignores the button group name.
addAction(CytoscapeAction) - Method in class cytoscape.view.CyMenus: Add the menu item.
addAction(CytoscapeAction, int) - Method in class cytoscape.view.CyMenus: Add the menu item in a specific position
addActionListener(ActionListener) - Method in class cytoscape.dialogs.ExportAsGraphicsFileChooser
addActionListener(ActionListener) - Method in class cytoscape.dialogs.ExportBitmapOptionsDialog: Add an action for when the "OK" button is pressed.
addAllAnnotationToNodes(AnnotationDescription, String) - Method in class cytoscape.data.annotation.OntologyMapperDialog: DOCUMENT ME!
addAlternateCommonName(String, String) - Method in class cytoscape.data.synonyms.Thesaurus: DOCUMENT ME!
addAnnotation(Annotation) - Method in class cytoscape.data.servers.BioDataServer: DOCUMENT ME!
addAnnotation(Annotation) - Method in interface cytoscape.data.servers.BioDataServerInterface: DOCUMENT ME!
addAnnotation(Annotation) - Method in class cytoscape.data.servers.BioDataServerRmi: if the new annotation is to an already annotated species, curator and type, then simply add (with possible overwriting for identical
addAnnotationToNodes(AnnotationDescription, int) - Method in class cytoscape.data.annotation.AnnotationGui: DOCUMENT ME!
addAnnotationToNodes(AnnotationDescription, int, String) - Method in class cytoscape.data.annotation.OntologyMapperDialog: DOCUMENT ME!
addArguments(ArrayList<String>) - Method in class cytoscape.util.JnlpWriterUtil
addAuthor(String, String) - Method in class cytoscape.plugin.PluginInfo: Adds an author to the list of authors.
addButtonActionListener(ActionListener) - Method in class cytoscape.data.servers.ui.AnotationPanel: DOCUMENT ME!
addCalculator(Calculator) - Method in class cytoscape.visual.CalculatorCatalog: Add any calculator to the catalog.
addCategory(String, List<PluginInfo>, PluginManageDialog.PluginInstallStatus) - Method in class cytoscape.dialogs.plugins.PluginManageDialog: Adds a category and it's list of plugins to the appropriate tree (based on Status) in the dialog.
addCategory(String, PluginInfo, List<PluginInfo>) - Method in class cytoscape.dialogs.plugins.PluginUpdateDialog: DOCUMENT ME
addCellEditorListener(CellEditorListener) - Method in class cytoscape.util.swing.AbstractCellEditor: DOCUMENT ME!
addChangeListener(ChangeListener, byte) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated.
addChangeListener(ChangeListener, VisualPropertyType) - Method in class cytoscape.visual.CalculatorCatalog: DOCUMENT ME!
addChangeListener(ChangeListener) - Method in class cytoscape.visual.calculators.AbstractCalculator: Add a ChangeListener to the calcaultor.
addChangeListener(ChangeListener) - Method in interface cytoscape.visual.calculators.Calculator: Add a ChangeListener to the calcaultor.
addChangeListener(ChangeListener) - Method in interface cytoscape.visual.mappings.ObjectMapping: Add a ChangeListener to the mapping.
addChangeListener(ChangeListener) - Method in class cytoscape.visual.mappings.PassThroughMapping: Empty implementation because PassThroughMapping has no UI.
addChangeListener(ChangeListener) - Method in class cytoscape.visual.SubjectBase: Add a ChangeListener.
addChild(TreeNode) - Method in class cytoscape.dialogs.plugins.TreeNode: Adds newChild to this node if children are allowed.
addChildren(TreeNode[]) - Method in class cytoscape.dialogs.plugins.TreeNode: Adds all children to the child list of this node if children are allowed.
addComponentToSouth(Component) - Method in class cytoscape.view.cytopanels.CytoPanelImp: Add a component to the CytoPanel just below the TabbedPane.
addContainer(int) - Method in class cytoscape.data.annotation.OntologyTerm: DOCUMENT ME!
addCyNetworkListener(CyNetworkListener) - Method in interface cytoscape.CyNetwork: Registers the argument as a listener to this object.
addCyNetworkListener(CyNetworkListener) - Method in class cytoscape.giny.FingCyNetwork: Registers the argument as a listener to this object.
addCytoPanelListener(CytoPanelListener) - Method in interface cytoscape.view.cytopanels.CytoPanel: Adds a CytoPanel listener.
addCytoPanelListener(CytoPanelListener) - Method in class cytoscape.view.cytopanels.CytoPanelImp: Adds a CytoPanel listener.
addCytoscapeAction(CytoscapeAction) - Method in class cytoscape.view.CyMenus: Takes a CytoscapeAction and will add it to the MenuBar or the Toolbar as is appropriate.
addCytoscapeAction(CytoscapeAction, int) - Method in class cytoscape.view.CyMenus: Add the menu item in a specific position
addDataDefinitionListener(MultiHashMapDefinitionListener) - Method in interface cytoscape.data.attr.MultiHashMapDefinition: Registers a listener for receiving events having to do with attribute definitions being created and deleted.
addDataListener(MultiHashMapListener) - Method in interface cytoscape.data.attr.MultiHashMap: Registers a listener for receiving events having to do with attribute values being assigned and removed.
addEdge(int) - Method in interface cytoscape.CyNetwork: Add a edge to this Network that already exists in Cytoscape
addEdge(Edge) - Method in interface cytoscape.CyNetwork: Add a edge to this Network that already exists in Cytoscape
addEdge(int) - Method in class cytoscape.giny.FingCyNetwork: Add a edge to this Network that already exists in Cytoscape
addEdge(Edge) - Method in class cytoscape.giny.FingCyNetwork: Add a edge to this Network that already exists in Cytoscape
addEdge(String, Object) - Method in class cytoscape.giny.FingCyNetwork: Adds a edge to this Network, by looking it up via the given attribute and value
addEdgeArrowCalculator(EdgeArrowCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addEdgeColorCalculator(EdgeColorCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addEdgeContextMenuListener(EdgeContextMenuListener) - Method in class cytoscape.ding.DingNetworkView: DOCUMENT ME!
addEdgeContextMenuListener(EdgeContextMenuListener) - Method in class cytoscape.giny.PhoebeNetworkView: Deprecated. DOCUMENT ME!
addEdgeContextMenuListener(EdgeContextMenuListener) - Method in interface cytoscape.view.CyNetworkView: DOCUMENT ME!
addEdgeFontFaceCalculator(EdgeFontFaceCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addEdgeFontSizeCalculator(EdgeFontSizeCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addEdgeLabelCalculator(EdgeLabelCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addEdgeLineTypeCalculator(EdgeLineTypeCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addEdgeToolTipCalculator(EdgeToolTipCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addEdit(UndoableEdit) - Method in class cytoscape.view.CytoscapeDesktop: Deprecated. Use CyUndo.getUndoableEditSupport().postEdit(edit) instead. Will be removed March 2008.
addExtension(String) - Method in class cytoscape.util.CyFileFilter: Adds a filetype "dot" extension to filter against.
addFilter(CyFileFilter) - Method in class cytoscape.data.ImportHandler: Registers a new CyFileFilter.
addFilter(CyFileFilter[]) - Method in class cytoscape.data.ImportHandler: Registers an Array of CyFileFilter Objects.
addGraphView(GraphView) - Method in class cytoscape.view.GraphViewController: Adds to the set of giny.view.GraphView objects that this GraphViewController keeps synchronized with their giny.model.GraphPerspective objects.
addGraphView(GraphView, GraphViewHandler) - Method in class cytoscape.view.GraphViewController: Adds to the set of giny.view.GraphView objects that this GraphViewController keeps synchronized to their giny.model.GraphPerspective objects.
addGroupChangeListener(CyGroupChangeListener) - Static method in class cytoscape.groups.CyGroupManager: Add a new change listener to our list of listeners
addInnerEdge(CyEdge) - Method in interface cytoscape.groups.CyGroup: Add an inner edge to the map.
addInnerEdge(CyEdge) - Method in class cytoscape.groups.CyGroupImpl: Add an inner edge to the map.
addItem(Object) - Method in class cytoscape.util.swing.FilterHistoryJList: DOCUMENT ME!
addItems(String[]) - Method in class cytoscape.dialogs.plugins.PluginUrlDialog: DOCUMENT ME!
addJars(String, ArrayList<String>, String) - Method in class cytoscape.util.JnlpWriterUtil
addLayout(CyLayoutAlgorithm, String) - Static method in class cytoscape.layout.CyLayouts: Add a layout to the layout manager's list.
addLicenseText(String) - Method in class cytoscape.dialogs.plugins.LicenseDialog
addListenerToFinish(ActionListener) - Method in class cytoscape.dialogs.plugins.LicenseDialog
addMapping(String, GMLNode) - Method in class cytoscape.data.readers.GMLNode: Add a mapping from key to node
addMapping(String, Class) - Method in class cytoscape.visual.CalculatorCatalog: Add a mapping to the database of available mappings.
addMapping(ObjectMapping) - Method in class cytoscape.visual.calculators.AbstractCalculator: Add a mapping to the mappings contained by the calculator.
addNetwork(String, String) - Method in class cytoscape.view.NetworkPanel: DOCUMENT ME!
addNode(int) - Method in interface cytoscape.CyNetwork: Add a node to this Network that already exists in Cytoscape
addNode(Node) - Method in interface cytoscape.CyNetwork: Add a node to this Network that already exists in Cytoscape
addNode(int) - Method in class cytoscape.giny.FingCyNetwork: Add a node to this Network that already exists in Cytoscape
addNode(Node) - Method in class cytoscape.giny.FingCyNetwork: Add a node to this Network that already exists in Cytoscape
addNode(String, Object) - Method in class cytoscape.giny.FingCyNetwork: Adds a node to this Network, by looking it up via the given attribute and value
addNode(CyNode) - Method in interface cytoscape.groups.CyGroup: Add a new node to this group
addNode(CyNode) - Method in class cytoscape.groups.CyGroupImpl: Add a new node to this group
addNodeAttribute(String) - Static method in class cytoscape.data.NetworkData: Attempts to add a new Attribute name, of Object type for nodes.
addNodeAttribute(String, int) - Static method in class cytoscape.data.NetworkData: Attempts to add a new Attribute name, of given type for nodes.
addNodeColorCalculator(NodeColorCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addNodeContextMenuListener(NodeContextMenuListener) - Method in class cytoscape.ding.DingNetworkView: DOCUMENT ME!
addNodeContextMenuListener(NodeContextMenuListener) - Method in class cytoscape.giny.PhoebeNetworkView: Deprecated. DOCUMENT ME!
addNodeContextMenuListener(NodeContextMenuListener) - Method in interface cytoscape.view.CyNetworkView: DOCUMENT ME!
addNodeFontFaceCalculator(NodeFontFaceCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addNodeFontSizeCalculator(NodeFontSizeCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addNodeLabelCalculator(NodeLabelCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addNodeLabelColorCalculator(NodeLabelColorCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addNodeLineTypeCalculator(NodeLineTypeCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addNodeShapeCalculator(NodeShapeCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addNodeSizeCalculator(NodeSizeCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addNodeToolTipCalculator(NodeToolTipCalculator) - Method in class cytoscape.visual.CalculatorCatalog: Deprecated. Use addCalculator(calc) instead. Will be removed 10/2007.
addNodeToParent(TreeNode, TreeNode) - Method in class cytoscape.dialogs.plugins.ManagerModel: Adds node to given parent, fires event
addObject(PluginInfo) - Method in class cytoscape.dialogs.plugins.TreeNode: Adds a PluginInfo object to this node.
addOntology(Ontology) - Method in class cytoscape.data.servers.OntologyServer
addOntology(URL, OntologyServer.OntologyType, String, String) - Method in class cytoscape.data.servers.OntologyServer
addOuterEdge(CyEdge) - Method in interface cytoscape.groups.CyGroup: Add an outer edge to the map.
addOuterEdge(CyEdge) - Method in class cytoscape.groups.CyGroupImpl: Add an outer edge to the map.
addParent(int) - Method in class cytoscape.data.annotation.OntologyTerm: DOCUMENT ME!
addPlugin(String) - Method in class cytoscape.dialogs.preferences.PluginsTableModel: Deprecated. DOCUMENT ME!
addPlugin(URL) - Method in class cytoscape.dialogs.preferences.PluginsTableModel: Deprecated. DOCUMENT ME!
addPluginToPropertyString(String) - Method in class cytoscape.dialogs.preferences.PluginsTableModel: Deprecated. DOCUMENT ME!
addPoint(double, BoundaryRangeValues) - Method in class cytoscape.visual.mappings.ContinuousMapping: Adds a New Data Point.
AddPointListener - Class in cytoscape.visual.mappings.continuous: Listens for User Request to Create New Point.
AddPointListener(ContinuousUI, ContinuousMapping, Object) - Constructor for class cytoscape.visual.mappings.continuous.AddPointListener: Deprecated.
AddPointListener(ContinuousMapping, Object) - Constructor for class cytoscape.visual.mappings.continuous.AddPointListener: Creates a new AddPointListener object.
addProperty(String[]) - Method in class cytoscape.dialogs.preferences.PreferenceTableModel: DOCUMENT ME!
addSelectButtonActionListener(ActionListener) - Method in class cytoscape.data.servers.ui.ManifestfileSelectionPanel: DOCUMENT ME!
addSelectEventListener(SelectEventListener) - Method in interface cytoscape.CyNetwork: Adds a listener for SelectEvents to this CyNetwork
addSelectEventListener(SelectEventListener) - Method in class cytoscape.data.SelectFilter: If the argument is not already a listener to this object, it is added.
addSelectEventListener(SelectEventListener) - Method in class cytoscape.giny.FingCyNetwork: Adds a listener for SelectEvents to this CyNetwork
addSynonym(Object) - Method in class cytoscape.data.ontology.OntologyTerm: In this implementation, key is the synonym name, and value is the synonym type.
addSynonym(Object, OntologyTerm.SynonymType) - Method in class cytoscape.data.ontology.OntologyTerm: In this implementation, key is the synonym name, and value is the synonym type.
addSynonym(Object) - Method in class cytoscape.data.ontology.Triple: Triple synonym is not supported.
addThesaurus(String, Thesaurus) - Method in class cytoscape.data.servers.BioDataServer: DOCUMENT ME!
addThesaurus(String, Thesaurus) - Method in interface cytoscape.data.servers.BioDataServerInterface: DOCUMENT ME!
addThesaurus(String, Thesaurus) - Method in class cytoscape.data.servers.BioDataServerRmi: DOCUMENT ME!
addToGroup(CyGroup) - Method in class cytoscape.CyNode: Add this node to the specified group.
addTreeModelListener(TreeModelListener) - Method in class cytoscape.dialogs.plugins.ManagerModel: Adds given listener
addTreeModelListener(TreeModelListener) - Method in class cytoscape.util.swing.AbstractTreeTableModel: DOCUMENT ME!
addVisualStyle(VisualStyle) - Method in class cytoscape.visual.CalculatorCatalog: DOCUMENT ME!
adjustColumnPreferredWidths(JTable) - Static method in class cytoscape.util.swing.ColumnResizer: DOCUMENT ME!
ALIAS - Static variable in class cytoscape.data.synonyms.Aliases: Name of the attribute for aliases
Aliases - Class in cytoscape.data.synonyms: Simpler version of Thesaurus.
Aliases(AliasType) - Constructor for class cytoscape.data.synonyms.Aliases: Constructor for the aliases object.
AliasType - Enum in cytoscape.data.synonyms: Type of Aliases.
AlignHorizontalAction - Class in cytoscape.actions
AlignHorizontalAction(CyNetworkView) - Constructor for class cytoscape.actions.AlignHorizontalAction: Creates a new AlignHorizontalAction object.
AlignVerticalAction - Class in cytoscape.actions
AlignVerticalAction(CyNetworkView) - Constructor for class cytoscape.actions.AlignVerticalAction: Creates a new AlignVerticalAction object.
ALL_ATTRIBUTES_FILTER - Static variable in class cytoscape.data.CyAttributesUtils: An AttributeFilter that produces all attributes--none are filtered out.
allAttributeValuesRemoved(String, String) - Method in interface cytoscape.data.attr.MultiHashMapListener: This listener method gets called as a result of MultiHashMap.removeAllAttributeValues(objectKey, attributeName), but only if objectKey has at least one attribute value bound in attributeName.
AlphabeticalSelectionAction - Class in cytoscape.actions
AlphabeticalSelectionAction() - Constructor for class cytoscape.actions.AlphabeticalSelectionAction: Creates a new AlphabeticalSelectionAction object.
AnimatedLayoutAction - Class in cytoscape.actions: Deprecated. Not apparently used. Shout if you are. Will be removed 5/2008.
AnimatedLayoutAction(CyNetworkView) - Constructor for class cytoscape.actions.AnimatedLayoutAction: Deprecated. Creates a new AnimatedLayoutAction object.
Annotation - Class in cytoscape.data.annotation: Store any number of classifications for named entities, each of which is from a specified species, and where the classifications are all terms from an ontology (a controlled vocabulary for some subject domain, expressed as a directed acyclic graph).
Annotation(String, String, Ontology) - Constructor for class cytoscape.data.annotation.Annotation: Creates a new Annotation object.
Annotation(String, String, String) - Constructor for class cytoscape.data.annotation.Annotation: Creates a new Annotation object.
AnnotationDescription - Class in cytoscape.data.annotation: Distinguish among different ontologies, by curator and type.
AnnotationDescription(String, String, String) - Constructor for class cytoscape.data.annotation.AnnotationDescription
AnnotationFlatFileReader - Class in cytoscape.data.annotation.readers
AnnotationFlatFileReader(File) - Constructor for class cytoscape.data.annotation.readers.AnnotationFlatFileReader: Creates a new AnnotationFlatFileReader object.
AnnotationFlatFileReader(BufferedReader, Thesaurus, boolean) - Constructor for class cytoscape.data.annotation.readers.AnnotationFlatFileReader: Creates a new AnnotationFlatFileReader object.
AnnotationFlatFileReader(String, Thesaurus) - Constructor for class cytoscape.data.annotation.readers.AnnotationFlatFileReader: Creates a new AnnotationFlatFileReader object.
AnnotationGui - Class in cytoscape.data.annotation
AnnotationGui() - Constructor for class cytoscape.data.annotation.AnnotationGui: Creates a new AnnotationGui object.
AnnotationGui(boolean, ImageIcon) - Constructor for class cytoscape.data.annotation.AnnotationGui: Creates a new AnnotationGui object.
AnnotationXmlReader - Class in cytoscape.data.annotation.readers
AnnotationXmlReader(File) - Constructor for class cytoscape.data.annotation.readers.AnnotationXmlReader: Creates a new AnnotationXmlReader object.
AnotationPanel - Class in cytoscape.data.servers.ui
AnotationPanel() - Constructor for class cytoscape.data.servers.ui.AnotationPanel: Creates new form GeneOntologyPanel2
AnotationPanelDescriptor - Class in cytoscape.data.servers.ui
AnotationPanelDescriptor() - Constructor for class cytoscape.data.servers.ui.AnotationPanelDescriptor: Creates a new AnotationPanelDescriptor object.
Appearance - Class in cytoscape.visual: A class that holds the appearance information for NodeViews and EdgeViews.
Appearance() - Constructor for class cytoscape.visual.Appearance: Creates a new Appearance object.
appendNetwork(CyNetwork) - Method in interface cytoscape.CyNetwork: Appends all of the nodes and edges in the given Network to this Network
appendNetwork(CyNetwork) - Method in class cytoscape.giny.FingCyNetwork: Appends all of the nodes and edges in teh given Network to this Network
appendSpecies(String) - Method in class cytoscape.data.servers.ui.GeneOntologyWizard: Deprecated. DOCUMENT ME!
apply(Appearance, Edge, CyNetwork) - Method in class cytoscape.visual.calculators.AbstractCalculator: DOCUMENT ME!
apply(Appearance, Node, CyNetwork) - Method in class cytoscape.visual.calculators.AbstractCalculator: DOCUMENT ME!
apply(Appearance, Edge, CyNetwork) - Method in interface cytoscape.visual.calculators.Calculator: DOCUMENT ME!
apply(Appearance, Node, CyNetwork) - Method in interface cytoscape.visual.calculators.Calculator: DOCUMENT ME!
apply(Object, VisualPropertyType) - Static method in class cytoscape.visual.ui.VizMapperMainPanel
applyAppearance(NodeView) - Method in class cytoscape.visual.Appearance: Applies this appearance to the specified NodeView.
applyAppearance(EdgeView) - Method in class cytoscape.visual.Appearance: Applies this appearance to the specified EdgeView.
applyAppearance(EdgeView, boolean) - Method in class cytoscape.visual.EdgeAppearance: Deprecated. Use applyAppearance(edgeView) instead - now we always optimize. Will be removed 10/2007
applyAppearances() - Method in class cytoscape.visual.VisualMappingManager: Recalculates and reapplies all of the node, edge, and global visual attributes.
applyBypass(GraphObject) - Method in class cytoscape.visual.Appearance: Applies the visual bypass values specified in the node (edge) attributes for the specified node (edge) to the node (edge).
applyDefaultProperties(Properties, String) - Method in class cytoscape.visual.Appearance: Applies the specified properties as default values for this appearance.
applyEdgeAppearances() - Method in class cytoscape.visual.VisualMappingManager: Recalculates and reapplies all of the edge appearances.
applyEdgeAppearances(CyNetwork, CyNetworkView) - Method in class cytoscape.visual.VisualMappingManager: Recalculates and reapplies all of the edge appearances.
applyGlobalAppearances() - Method in class cytoscape.visual.VisualMappingManager: Recalculates and reapplies the global visual attributes.
applyGlobalAppearances(CyNetwork, CyNetworkView) - Method in class cytoscape.visual.VisualMappingManager: Recalculates and reapplies the global visual attributes.
applyLayout(CyLayoutAlgorithm) - Method in class cytoscape.ding.DingNetworkView: DOCUMENT ME!
applyLayout(CyLayoutAlgorithm, CyNode[], CyEdge[]) - Method in class cytoscape.ding.DingNetworkView: DOCUMENT ME!
applyLayout(CyLayoutAlgorithm, CyNodeView[], CyEdgeView[]) - Method in class cytoscape.ding.DingNetworkView: DOCUMENT ME!
applyLayout(CyLayoutAlgorithm, int[], int[]) - Method in class cytoscape.ding.DingNetworkView: DOCUMENT ME!
applyLayout(CyLayoutAlgorithm) - Method in class cytoscape.giny.PhoebeNetworkView: Deprecated. Applies the given layout to the entire CyNetworkView
applyLayout(CyLayoutAlgorithm, CyNode[], CyEdge[]) - Method in class cytoscape.giny.PhoebeNetworkView: Deprecated. Applies the given layout to only the given Nodes and Edges
applyLayout(CyLayoutAlgorithm, CyNodeView[], CyEdgeView[]) - Method in class cytoscape.giny.PhoebeNetworkView: Deprecated. Applies the given layout to only the given NodeViews and EdgeViews
applyLayout(CyLayoutAlgorithm, int[], int[]) - Method in class cytoscape.giny.PhoebeNetworkView: Deprecated. Applies the given layout to only the given Nodes and Edges
applyLayout(CyLayoutAlgorithm) - Method in interface cytoscape.view.CyNetworkView: Applies the given layout to the entire CyNetworkView
applyLayout(CyLayoutAlgorithm, CyNode[], CyEdge[]) - Method in interface cytoscape.view.CyNetworkView: Applies the given layout to only the given Nodes and Edges
applyLayout(CyLayoutAlgorithm, CyNodeView[], CyEdgeView[]) - Method in interface cytoscape.view.CyNetworkView: Applies the given layout to only the given NodeViews and EdgeViews
applyLayout(CyLayoutAlgorithm, int[], int[]) - Method in interface cytoscape.view.CyNetworkView: Applies the given layout to only the given Nodes and Edges
applyLayout(GraphView) - Method in interface cytoscape.view.NetworkView: Deprecated. added for giny, applies the layout on the view
applyLockedLayout(CyLayoutAlgorithm, CyNode[], CyEdge[]) - Method in class cytoscape.ding.DingNetworkView: DOCUMENT ME!
applyLockedLayout(CyLayoutAlgorithm, CyNodeView[], CyEdgeView[]) - Method in class cytoscape.ding.DingNetworkView: DOCUMENT ME!
applyLockedLayout(CyLayoutAlgorithm, int[], int[]) - Method in class cytoscape.ding.DingNetworkView: DOCUMENT ME!
applyLockedLayout(CyLayoutAlgorithm, CyNode[], CyEdge[]) - Method in class cytoscape.giny.PhoebeNetworkView: Deprecated. Applies the given layout to the entire CyNetworkView, but locks the given Nodes and Edges in place
applyLockedLayout(CyLayoutAlgorithm, CyNodeView[], CyEdgeView[]) - Method in class cytoscape.giny.PhoebeNetworkView: Deprecated. Applies the given layout to the entire CyNetworkView, but locks the given NodeViews and EdgeViews in place
applyLockedLayout(CyLayoutAlgorithm, int[], int[]) - Method in class cytoscape.giny.PhoebeNetworkView: Deprecated. Applies the given layout to the entire CyNetworkView, but locks the given Nodes and Edges in place
applyLockedLayout(CyLayoutAlgorithm, CyNode[], CyEdge[]) - Method in interface cytoscape.view.CyNetworkView: Applies the given layout to the entire CyNetworkView, but locks the given Nodes and Edges in place
applyLockedLayout(CyLayoutAlgorithm, CyNodeView[], CyEdgeView[]) - Method in interface cytoscape.view.CyNetworkView: Applies the given layout to the entire CyNetworkView, but locks the given NodeViews and EdgeViews in place
applyLockedLayout(CyLayoutAlgorithm, int[], int[]) - Method in interface cytoscape.view.CyNetworkView: Applies the given layout to the entire CyNetworkView, but locks the given Nodes and Edges in place
applyMaps(String, String) - Method in class cytoscape.data.readers.GMLReader: DOCUMENT ME!
applyNamingServices(CyNetwork) - Static method in class cytoscape.data.Semantics: This method should be called in the process of creating a new network, or upon loading a new bioDataServer.
applyNodeAppearances() - Method in class cytoscape.visual.VisualMappingManager: Recalculates and reapplies all of the node appearances.
applyNodeAppearances(CyNetwork, CyNetworkView) - Method in class cytoscape.visual.VisualMappingManager: Recalculates and reapplies all of the node appearances.
applyProperties(String, Properties, String, CalculatorCatalog) - Method in class cytoscape.visual.EdgeAppearanceCalculator: DOCUMENT ME!
applyProperties(String, Properties, String, CalculatorCatalog) - Method in class cytoscape.visual.GlobalAppearanceCalculator: This method customizes this object by searching the supplied properties object for keys identifying default values and calculators.
applyProperties(Properties, String, ValueParser) - Method in class cytoscape.visual.mappings.ContinuousMapping: Customizes this object by applying mapping defintions described by the supplied Properties argument.
applyProperties(Properties, String, ValueParser) - Method in class cytoscape.visual.mappings.DiscreteMapping: Customizes this object by applying mapping defintions described by the supplied Properties argument.
applyProperties(Properties, String, ValueParser) - Method in interface cytoscape.visual.mappings.ObjectMapping
applyProperties(Properties, String, ValueParser) - Method in class cytoscape.visual.mappings.PassThroughMapping: Customize this object by applying mapping defintions described by the supplied Properties argument.
applyProperties(String, Properties, String, CalculatorCatalog) - Method in class cytoscape.visual.NodeAppearanceCalculator: DOCUMENT ME!
applyToEdgeView(EdgeView, Object) - Method in class cytoscape.visual.properties.AbstractVisualProperty: DOCUMENT ME!
applyToEdgeView(EdgeView, Object) - Method in class cytoscape.visual.properties.EdgeColorProp: DOCUMENT ME!
applyToEdgeView(EdgeView, Object) - Method in class cytoscape.visual.properties.EdgeFontFaceProp: DOCUMENT ME!
applyToEdgeView(EdgeView, Object) - Method in class cytoscape.visual.properties.EdgeFontSizeProp: DOCUMENT ME!
applyToEdgeView(EdgeView, Object) - Method in class cytoscape.visual.properties.EdgeLabelColorProp: DOCUMENT ME!
applyToEdgeView(EdgeView, Object) - Method in class cytoscape.visual.properties.EdgeLabelOpacityProp: DOCUMENT ME!
applyToEdgeView(EdgeView, Object) - Method in class cytoscape.visual.properties.EdgeLabelProp: DOCUMENT ME!