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Cytoscape 2.6.1 (c) 2006,2007 ISB, MSKCC, UCSD
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cytoscape.data.ontology.readers
Interface OntologyReader

All Known Implementing Classes:
OBOFlatFileReader
public interface OntologyReader

Interface for all ontology file readers. Basic function of the readers are build ontology DAG/Tree and its header. Actual data steructure is always CyNetwork and CyAttributes.

Author:
kono

Method Summary
 CyNetwork getDag()
          DOCUMENT ME!
 Map getHeader()
          DOCUMENT ME!
 void readOntology()
          DOCUMENT ME!
 

Method Detail

readOntology

void readOntology()
                  throws IOException
DOCUMENT ME!

Throws:
IOException - DOCUMENT ME!

getDag

CyNetwork getDag()
DOCUMENT ME!

Returns:
DOCUMENT ME!

getHeader

Map getHeader()
DOCUMENT ME!

Returns:
DOCUMENT ME!
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