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Class Summary |
| AlignHorizontalAction |
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| AlignVerticalAction |
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| AlphabeticalSelectionAction |
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| AnimatedLayoutAction |
Deprecated. Not apparently used. |
| ArrangeAction |
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| BackgroundColorAction |
Deprecated. Use vizmapper gui to edit background color. |
| BendSelectedEdgesAction |
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| BirdsEyeViewAction |
Deprecated. This class is no longer used since the BirdsEyeView is now always part of
the NetworkPanel. |
| BookmarkAction |
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| CheckBoxFileChooser |
Deprecated. This isn't apparently used anywhere. |
| CloneGraphInNewWindowAction |
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| CreateNetworkViewAction |
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| CytoPanelAction |
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| DeleteAction |
action for deleting selected Cytoscape nodes and edges |
| DeselectAllAction |
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| DeSelectAllEdgesAction |
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| DeSelectAllNodesAction |
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| DestroyNetworkAction |
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| DestroyNetworkViewAction |
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| EdgeManipulationAction |
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| ExitAction |
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| ExpFileChooser |
Deprecated. Not apparently used anywhere. |
| ExportAction |
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| ExportAsGMLAction |
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| ExportAsGraphicsAction |
Action for exporting a network view to bitmap or vector graphics. |
| ExportAsInteractionsAction |
write out the current graph to the specified file, using the standard
interactions format: nodeA edgeType nodeB. |
| ExportAsXGMMLAction |
This action is for exporting network and attributes in XGMML file. |
| ExportEdgeAttributesAction |
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| ExportNodeAttributesAction |
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| ExportVizmapAction |
Export visual styles as a vizmap.props file
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| FitContentAction |
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| GinyUtils |
Utility operations for selection and hiding/unhiding nodes and edges
in a Giny GraphView. |
| GraphObjectSelectionAction |
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| HelpAboutAction |
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| HelpContactHelpDeskAction |
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| HelpContentsAction |
Really just a wrapper for the CSH.DisplayHelpFromSource action. |
| HideSelectedAction |
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| HideSelectedEdgesAction |
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| HideSelectedNodesAction |
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| ImportBioDataServerAction |
Action allows the loading of a BioDataServer from the gui. |
| ImportEdgeAttributesAction |
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| ImportExpressionMatrixAction |
User has requested loading of an Expression Matrix File. |
| ImportGraphFileAction |
Imports a graph of arbitrary type. |
| ImportNodeAttributesAction |
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| ImportVizmapAction |
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| InvertSelectedEdgesAction |
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| InvertSelectedNodesAction |
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| ListFromFileSelectionAction |
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| LoadNetworkTask |
Task to load a new network. |
| LoggerAction |
Created by IntelliJ IDEA. |
| MapOntologyAction |
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| NewNetworkAction |
creates a new network and associates an editor with it |
| NewSessionAction |
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| NewWindowSelectedNodesEdgesAction |
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| NewWindowSelectedNodesOnlyAction |
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| OpenSessionAction |
Call the session reader and read everything in the zip archive. |
| PluginManagerAction |
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| PluginUpdateAction |
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| PreferenceAction |
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| PrintAction |
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| ProxyServerAction |
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| RotateSelectedNodesAction |
Rotates the given selection by the specified amount. |
| SaveSessionAction |
Save Session action. |
| SaveSessionAsAction |
Same as SaveSessionAction, but always opens file chooser. |
| SelectAdjacentEdgesAction |
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| SelectAllAction |
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| SelectAllEdgesAction |
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| SelectAllNodesAction |
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| SelectConnectedNodesAction |
select every node connected to the current selected edges. |
| SelectFirstNeighborsAction |
select every first neighbor (directly connected nodes) of the currently
selected nodes. |
| SelectionModeAction |
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| SetVisualPropertiesAction |
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| ShowAllAction |
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| ShowGraphicsDetailsAction |
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| StraightenSelectedEdgesAction |
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| ToggleVisualMapperAction |
This class implements two menu items that allow enabling and disabling the
visual mapper. |
| UnHideSelectedAction |
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| UnHideSelectedEdgesAction |
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| UnHideSelectedNodesAction |
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| WebServiceNetworkImportAction |
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| ZoomAction |
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| ZoomSelectedAction |
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