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Cytoscape 2.7.0 (c) 2006,2007 ISB, MSKCC, UCSD | ||||||||
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giny.view.GraphView
objects that this
GraphViewController
keeps synchronized with their
giny.model.GraphPerspective
objects.
giny.view.GraphView
objects that this
GraphViewController
keeps synchronized to their
giny.model.GraphPerspective
objects.
CyAttributesUtils.traverseAttributeValues()
.GraphViewHandler
that simply reflects GraphPerspective
changes on a given GraphView
BirdsEyeViewHandler
and initialized in
This class will be removed 5/2008.CytoscapeProgressMonitor
when the user
click on the Cancel button.
get
method.
giny.view.GraphView
is kept synchronized
with its giny.model.GraphPerspective
member by this
GraphViewController
.
CyCommand
s and CyCommandNamespace
s.CyCommand
s.CytoscapeToolBar.initializeCytoscapeToolBar()
.
Tunable.USESLIDER
is set,
and the caller provides both lower and upper bounds,
the user is presented with a slider interface.
Tunable.NUMERICATTRIBUTE
is set, only
integer or double attributes are shown, and if
the Tunable.MULTISELECT
flag is set, the user
is presented with a list from which multiple
values can be selected, otherwise, the user
is presented with a combo box.
construct
method has returned.
FontChooser
JList or JComboBox in the face specified.construct
method.
getListAttribute()
instead. Will be removed 11/2007.
getMapAttribute()
instead. Will be removed 11/2007.
CyAttributes
directly. This method will be
removed in May, 2007.
CyAttributes
directly. This method will be
removed in May, 2007.
column
.
column
.
cytoscape.view.GraphViewHandler
for the given
giny.view.GraphView
Map
with giny.view.GraphView
objects as keys, and cytoscape.view.GraphViewHandler
objects
as values, two or more different keys can share the same value.
giny.view.GraphView
objects
that this GraphViewController
will keep synchronized with
their corresponding giny.model.GraphPerspective
objects
available through their getGraphPerspective()
method
DownloadableInfo.getType()
DownloadableInfo.getType()
node
,
at column number column
.
giny.model.GraphPerspective
objects accessed through giny.view.GraphView.getGraphPerspective()
of
this object's graphViews is made.
GraphViewController.DEFAULT_GRAPH_VIEW_HANDLER
to all the given giny.view.GraphView
objects in the array.
cytoscape.view.GraphViewHandler
objects
for the given giny.view.GraphView
objects in the arrays.
giny.mode.GraphPerspective
by updating one of its
giny.view.GraphView
s.halt()
is a non-blocking request to halt the task, and
is called by an external entity.
giny.view.GraphView
.
giny.view.GraphView
.
CyAttributesUtils.copyAttributes()
.
Tunable.USESLIDER
is set,
and the caller provides both lower and upper bounds,
the user is presented with a slider interface.
node
,
at column number column
is editable.
Tunable.MULTISELECT
flag is
set, the user is presented with a list
from which multiple values can be selected,
otherwise, the user is presented with a
combo box.
Tunable.NUMERICATTRIBUTE
is set, only
integer or double attributes are shown, and if
the Tunable.MULTISELECT
flag is set, the user
is presented with a list from which multiple
values can be selected, otherwise, the user
is presented with a combo box.
DownloadableInfo.DownloadableInfo()
Initializes a PluginInfo object with the following defaults:
setName("Unknown"); setDescription("No description");
setObjectVersion("0.1"); setCytoscapeVersion(
cytoscape.cytoscapeVersion.version ); setCategory("Uncategorized");
DownloadableInfo.DownloadableInfo(String)
DownloadableInfo.DownloadableInfo(String)
PluginManager#inquireThread(String, PluginInquireAction)
method to get plugins from a given site.CyAttributes
directly. This method will be
removed in May, 2007.
giny.view.GraphView
objects that this
GraphViewController
keeps synchronized to their corresponding
giny.model.GraphPerspective
members.
GraphViewController
contains the given
giny.view.GraphView
, then it is removed from it, and it no longer listens
for change events from the removed giny.view.GraphView
's
giny.model.GraphPerspective
.
giny.view.GraphView
object.
giny.view.GraphView
object.
giny.view.GraphView
object,
it also removes the connected edges to these nodes (an edge without a connecting node makes
no mathematical sense).
giny.view.GraphView
object, it also removes the connected edges to
these nodes (an edge without a connecting node makes no mathematical sense).
giny.view.GraphView
object
giny.view.GraphView
object
giny.view.GraphView
object
giny.view.GraphView
object
GraphViewController
as a listener for
all giny.model.GraphPerspective
that were temporarily
"removed" by calling stopListening()
, it updates the GraphViews
of the GraphPerspectives
so that they are synchronized to reflect changes that
may have occured while not listening.
GraphViewController
listener to the
giny.model.GraphPerspective
of the given giny.view.GraphView
that was temporarily "removed" by a call to stopListening(GraphView)
, it updates
graph_view
so that it's synchronized to its GraphPerspective
due to changes that may have occured while not listening.
run()
executes the task, and is called by an
external entity.
giny.view.GraphView
object.
giny.view.GraphView
object.
setListAttribute()
instead. Will be removed 11/2007.
setMapAttribute()
instead. Will be removed 11/2007.
giny.view.GraphView
object belongs to this
GraphViewController
, then its GraphViewHandler
is set to the given one.
giny.view.GraphView
objects
that this GraphViewController
will keep synchronized with
their corresponding giny.model.GraphPerspective
objects
available through their getGraphPerspective()
method, the
DEFAULT_GRAPH_VIEW_HANDLER is set for all the views.
giny.view.GraphView
objects
that this GraphViewController
will keep synchronized with
their corresponding giny.model.GraphPerspective
objects
available through their getGraphPerspective()
method, the
cytoscape.view.GraphViewHandler
objects for the
GraphView
s are obtained from the given Map
,
if a GraphView
in the array is not a key in the Map
then DEFAULT_GRAPH_VIEW_HANDLER is used.
Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean)
Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean)
CyNetwork.setSelectedEdgeState(Collection, boolean)
CyNetwork.setSelectedEdgeState(Collection, boolean)
Task
know who it should report to regarding
task progress, errors, status description, etc.
node
,
at column number column
.
GraphViewController
as a listener for
all giny.model.GraphPerspective
objects that it currently
listens to
GraphViewController
listener
from the giny.model.GraphPerspective
object that the given
giny.view.GraphView
views.
construct
method
and then exit.
Task.run()
and tasks are terminated prematurely
[and asynchronously] with Task.halt()
.DownloadableInfo.DownloadableInfo()
Initializes a ThemeInfo object with the following defaults:
setName("Unknown"); setDescription("No description");
setObjectVersion("0.1"); setCytoscapeVersion(
cytoscape.cytoscapeVersion.version ); setCategory("Theme");
DownloadableInfo.DownloadableInfo(String)
CytoscapeMenuBar.getIdentifier()
.
giny.view.GraphView
object
giny.view.GraphView
object
GraphPerspective
giny.model.GraphPerspective
Useful if GraphPerspectiveChangeEvents
haven't been handled,
and a graph_view
must be made synchronized with its GraphPerspective.
#setExitJVMWhenAllWindowsClose
and #addPrimaryWindow( Window )
).' '
.
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