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giny.view.GraphView objects that this
GraphViewController keeps synchronized with their
giny.model.GraphPerspective objects.
giny.view.GraphView objects that this
GraphViewController keeps synchronized to their
giny.model.GraphPerspective objects.
CyAttributesUtils.traverseAttributeValues().GraphViewHandler that simply reflects GraphPerspective
changes on a given GraphViewBirdsEyeViewHandler and initialized in
This class will be removed 5/2008.CytoscapeProgressMonitor when the user
click on the Cancel button.
get method.
giny.view.GraphView is kept synchronized
with its giny.model.GraphPerspective member by this
GraphViewController.
CyCommands and CyCommandNamespaces.CyCommands.CytoscapeToolBar.initializeCytoscapeToolBar().
Tunable.USESLIDER is set,
and the caller provides both lower and upper bounds,
the user is presented with a slider interface.
Tunable.NUMERICATTRIBUTE is set, only
integer or double attributes are shown, and if
the Tunable.MULTISELECT flag is set, the user
is presented with a list from which multiple
values can be selected, otherwise, the user
is presented with a combo box.
construct method has returned.
FontChooser
JList or JComboBox in the face specified.construct method.
getListAttribute() instead. Will be removed 11/2007.
getMapAttribute() instead. Will be removed 11/2007.
CyAttributes directly. This method will be
removed in May, 2007.
CyAttributes directly. This method will be
removed in May, 2007.
column.
column.
cytoscape.view.GraphViewHandler for the given
giny.view.GraphView
Map with giny.view.GraphView
objects as keys, and cytoscape.view.GraphViewHandler objects
as values, two or more different keys can share the same value.
giny.view.GraphView objects
that this GraphViewController will keep synchronized with
their corresponding giny.model.GraphPerspective objects
available through their getGraphPerspective() method
DownloadableInfo.getType()
DownloadableInfo.getType()
node,
at column number column.
giny.model.GraphPerspective
objects accessed through giny.view.GraphView.getGraphPerspective() of
this object's graphViews is made.
GraphViewController.DEFAULT_GRAPH_VIEW_HANDLER
to all the given giny.view.GraphView objects in the array.
cytoscape.view.GraphViewHandler objects
for the given giny.view.GraphView objects in the arrays.
giny.mode.GraphPerspective by updating one of its
giny.view.GraphViews.halt() is a non-blocking request to halt the task, and
is called by an external entity.
giny.view.GraphView.
giny.view.GraphView.
CyAttributesUtils.copyAttributes().
Tunable.USESLIDER is set,
and the caller provides both lower and upper bounds,
the user is presented with a slider interface.
node,
at column number column is editable.
Tunable.MULTISELECT flag is
set, the user is presented with a list
from which multiple values can be selected,
otherwise, the user is presented with a
combo box.
Tunable.NUMERICATTRIBUTE is set, only
integer or double attributes are shown, and if
the Tunable.MULTISELECT flag is set, the user
is presented with a list from which multiple
values can be selected, otherwise, the user
is presented with a combo box.
DownloadableInfo.DownloadableInfo()
Initializes a PluginInfo object with the following defaults:
setName("Unknown"); setDescription("No description");
setObjectVersion("0.1"); setCytoscapeVersion(
cytoscape.cytoscapeVersion.version ); setCategory("Uncategorized");
DownloadableInfo.DownloadableInfo(String)
DownloadableInfo.DownloadableInfo(String)
PluginManager#inquireThread(String, PluginInquireAction)
method to get plugins from a given site.CyAttributes directly. This method will be
removed in May, 2007.
giny.view.GraphView objects that this
GraphViewController keeps synchronized to their corresponding
giny.model.GraphPerspective members.
GraphViewController contains the given
giny.view.GraphView, then it is removed from it, and it no longer listens
for change events from the removed giny.view.GraphView's
giny.model.GraphPerspective.
giny.view.GraphView
object.
giny.view.GraphView
object.
giny.view.GraphView object,
it also removes the connected edges to these nodes (an edge without a connecting node makes
no mathematical sense).
giny.view.GraphView object, it also removes the connected edges to
these nodes (an edge without a connecting node makes no mathematical sense).
giny.view.GraphView
object
giny.view.GraphView object
giny.view.GraphView object
giny.view.GraphView object
GraphViewController as a listener for
all giny.model.GraphPerspective that were temporarily
"removed" by calling stopListening(), it updates the GraphViews
of the GraphPerspectives so that they are synchronized to reflect changes that
may have occured while not listening.
GraphViewController listener to the
giny.model.GraphPerspective of the given giny.view.GraphView
that was temporarily "removed" by a call to stopListening(GraphView), it updates
graph_view so that it's synchronized to its GraphPerspective
due to changes that may have occured while not listening.
run() executes the task, and is called by an
external entity.
giny.view.GraphView object.
giny.view.GraphView object.
setListAttribute() instead. Will be removed 11/2007.
setMapAttribute() instead. Will be removed 11/2007.
giny.view.GraphView object belongs to this
GraphViewController, then its GraphViewHandler
is set to the given one.
giny.view.GraphView objects
that this GraphViewController will keep synchronized with
their corresponding giny.model.GraphPerspective objects
available through their getGraphPerspective() method, the
DEFAULT_GRAPH_VIEW_HANDLER is set for all the views.
giny.view.GraphView objects
that this GraphViewController will keep synchronized with
their corresponding giny.model.GraphPerspective objects
available through their getGraphPerspective() method, the
cytoscape.view.GraphViewHandler objects for the
GraphViews are obtained from the given Map,
if a GraphView in the array is not a key in the Map
then DEFAULT_GRAPH_VIEW_HANDLER is used.
Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean)
Cytoscape.CyNetwork#setSelectedNodeState(Collection, boolean)
CyNetwork.setSelectedEdgeState(Collection, boolean)
CyNetwork.setSelectedEdgeState(Collection, boolean)
Task know who it should report to regarding
task progress, errors, status description, etc.
node,
at column number column.
GraphViewController as a listener for
all giny.model.GraphPerspective objects that it currently
listens to
GraphViewController listener
from the giny.model.GraphPerspective object that the given
giny.view.GraphView views.
construct method
and then exit.
Task.run() and tasks are terminated prematurely
[and asynchronously] with Task.halt().DownloadableInfo.DownloadableInfo()
Initializes a ThemeInfo object with the following defaults:
setName("Unknown"); setDescription("No description");
setObjectVersion("0.1"); setCytoscapeVersion(
cytoscape.cytoscapeVersion.version ); setCategory("Theme");
DownloadableInfo.DownloadableInfo(String)
CytoscapeMenuBar.getIdentifier().
giny.view.GraphView object
giny.view.GraphView object
GraphPerspective
giny.model.GraphPerspective
Useful if GraphPerspectiveChangeEvents haven't been handled,
and a graph_view must be made synchronized with its GraphPerspective.
#setExitJVMWhenAllWindowsClose
and #addPrimaryWindow( Window )).' '.
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