Package cytoscape.actions

UI classes that are attached to menu items in the menu or tool bar of the window.

See:
Description

Class Summary

AlignHorizontalAction
AlignVerticalAction
AlphabeticalSelectionAction
AnimatedLayoutAction	Deprecated. Not apparently used.
ApplyLayoutAction
ApplyVisualStyleAction	Apply Visual Style for a set of selected networks.
ArrangeAction
BackgroundColorAction	Deprecated. Use vizmapper gui to edit background color.
BendSelectedEdgesAction
BirdsEyeViewAction	Deprecated. This class is no longer used since the BirdsEyeView is now always part of the NetworkPanel.
BookmarkAction
CheckBoxFileChooser	Deprecated. This isn't apparently used anywhere.
CloneGraphInNewWindowAction
CreateNetworkViewAction
CytoPanelAction
DeleteAction	action for deleting selected Cytoscape nodes and edges
DeselectAllAction
DeSelectAllEdgesAction
DeSelectAllNodesAction
DestroyNetworkAction
DestroyNetworkViewAction
EdgeManipulationAction
ExitAction
ExpFileChooser	Deprecated. Not apparently used anywhere.
ExportAction
ExportAsGMLAction
ExportAsGraphicsAction	Action for exporting a network view to bitmap or vector graphics.
ExportAsInteractionsAction	write out the current graph to the specified file, using the standard interactions format: nodeA edgeType nodeB.
ExportAsXGMMLAction	This action is for exporting network and attributes in XGMML file.
ExportEdgeAttributesAction
ExportNetworksAsNNFAction	This action is for exporting network and attributes in XGMML file.
ExportNodeAttributesAction
ExportVizmapAction	Export visual styles as a vizmap.props file
FitContentAction
GinyUtils	Utility operations for selection and hiding/unhiding nodes and edges in a Giny GraphView.
GraphObjectSelectionAction
HelpAboutAction
HelpContactHelpDeskAction
HelpContentsAction	Really just a wrapper for the CSH.DisplayHelpFromSource action.
HideSelectedAction
HideSelectedEdgesAction
HideSelectedNodesAction
ImportEdgeAttributesAction
ImportExpressionMatrixAction	User has requested loading of an Expression Matrix File.
ImportGraphFileAction	Imports a graph of arbitrary type.
ImportNodeAttributesAction
ImportVizmapAction
InvertSelectedEdgesAction
InvertSelectedNodesAction
ListFromFileSelectionAction	Select nodes from a text list of node IDs.
LoadNetworkTask	Task to load a new network.
LoggerAction	Created by IntelliJ IDEA.
MemoryUsageAction
NewNetworkAction	creates a new network and associates an editor with it
NewSessionAction
NewWindowSelectedNodesEdgesAction
NewWindowSelectedNodesOnlyAction
OpenSessionAction	Call the session reader and read everything in the zip archive.
PluginManagerAction
PluginUpdateAction
PreferenceAction
PrintAction
ProxyServerAction
RotateSelectedNodesAction	Rotates the given selection by the specified amount.
SaveSessionAction	Save Session action. Write current states into a CYS file.
SaveSessionAsAction	Same as SaveSessionAction, but always opens file chooser.
SelectAdjacentEdgesAction
SelectAllAction
SelectAllEdgesAction
SelectAllNodesAction
SelectConnectedNodesAction	select every node connected to the current selected edges.
SelectFirstNeighborsAction	select every first neighbor (directly connected nodes) of the currently selected nodes.
SelectionModeAction
SetVisualPropertiesAction
ShowAllAction
ShowCustomGraphicsManagerAction	Display Custom Graphics Manager GUI.
ShowGraphicsDetailsAction
StraightenSelectedEdgesAction
ToggleVisualMapperAction	This class implements two menu items that allow enabling and disabling the visual mapper.
UnHideSelectedAction
UnHideSelectedEdgesAction
UnHideSelectedNodesAction
WebServiceNetworkImportAction
ZoomAction
ZoomSelectedAction

Package cytoscape.actions Description

UI classes that are attached to menu items in the menu or tool bar of the window. These classes are usually short and delegate to other objects to do the actual work.