cytoscape.data.annotation.readers
Class AnnotationFlatFileReader

java.lang.Object
  cytoscape.data.annotation.readers.AnnotationFlatFileReader

public class AnnotationFlatFileReader
extends Object

Constructor Summary

AnnotationFlatFileReader(BufferedReader rd, Thesaurus th, boolean isFlip)
Creates a new AnnotationFlatFileReader object.

AnnotationFlatFileReader(File file)
Creates a new AnnotationFlatFileReader object.

AnnotationFlatFileReader(String filename, Thesaurus th)
Creates a new AnnotationFlatFileReader object.

Method Summary

Annotation	getAnnotation() DOCUMENT ME!
void	parseHeader(String firstLine) DOCUMENT ME!

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnnotationFlatFileReader

public AnnotationFlatFileReader(File file)
                         throws Exception

Creates a new AnnotationFlatFileReader object.

Parameters:

file - DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

AnnotationFlatFileReader

public AnnotationFlatFileReader(BufferedReader rd,
                                Thesaurus th,
                                boolean isFlip)
                         throws Exception

Creates a new AnnotationFlatFileReader object.

Parameters:

rd - DOCUMENT ME!

th - DOCUMENT ME!

isFlip - DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

AnnotationFlatFileReader

public AnnotationFlatFileReader(String filename,
                                Thesaurus th)
                         throws Exception

Creates a new AnnotationFlatFileReader object.

Parameters:

filename - DOCUMENT ME!

th - DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

Method Detail

parseHeader

public void parseHeader(String firstLine)
                 throws Exception

DOCUMENT ME!

Parameters:

firstLine - DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

IllegalArgumentException - DOCUMENT ME!

getAnnotation

public Annotation getAnnotation()

DOCUMENT ME!

Returns:

DOCUMENT ME!