cytoscape.data.ontology
Class OntologyFactory

java.lang.Object
  cytoscape.data.ontology.OntologyFactory

public class OntologyFactory
extends Object

Constructor Summary

OntologyFactory()

Method Summary

Ontology	createBasicOntology(URL dataSource, String name, String description) DOCUMENT ME!
GeneOntology	createGeneOntology(URL dataSource, String name, String description) DOCUMENT ME!

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OntologyFactory

public OntologyFactory()

Method Detail

createBasicOntology

public Ontology createBasicOntology(URL dataSource,
                                    String name,
                                    String description)
                             throws IOException,
                                    URISyntaxException

DOCUMENT ME!

Parameters:

dataSource - DOCUMENT ME!

name - DOCUMENT ME!

description - DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

IOException - DOCUMENT ME!

URISyntaxException - DOCUMENT ME!

createGeneOntology

public GeneOntology createGeneOntology(URL dataSource,
                                       String name,
                                       String description)
                                throws IOException,
                                       URISyntaxException

DOCUMENT ME!

Parameters:

dataSource - DOCUMENT ME!

name - DOCUMENT ME!

description - DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

IOException - DOCUMENT ME!

URISyntaxException - DOCUMENT ME!