cytoscape.data.ontology.readers
Interface OntologyReader

All Known Implementing Classes:

OBOFlatFileReader

public interface OntologyReader

Interface for all ontology file readers. Basic function of the readers are build ontology DAG/Tree and its header. Actual data steructure is always CyNetwork and CyAttributes.

Author:

kono

Method Summary

CyNetwork	getDag() DOCUMENT ME!
Map	getHeader() DOCUMENT ME!
void	readOntology() DOCUMENT ME!

Method Detail

readOntology

void readOntology()
                  throws IOException

DOCUMENT ME!

Throws:

IOException - DOCUMENT ME!

getDag

CyNetwork getDag()

DOCUMENT ME!

Returns:

DOCUMENT ME!

getHeader

Map getHeader()

DOCUMENT ME!

Returns:

DOCUMENT ME!