Package cytoscape.data

Basic data classes used by Cytoscape.

See:
Description

Interface Summary

AttributeFilter	Interface for defining CyEdge-based filters used for determining which Edges should be used for a particular operation, such as CyAttributesUtils.copyAttributes().
AttributeValueVisitor	Interface for defining attribute value visitors--operations to perform on each attribute value using CyAttributesUtils.traverseAttributeValues().
CyAttributes	CyAttributes provides access to network, node, and edge attributes within Cytoscape.
SelectEventListener	Listener for SelectEvents fired by a SelectFilter object.

Class Summary

AttribTopoGraphNode	Represents a node in a topological graph.
AttributeSaverDialog	Dialog box to save various attributes.
CyAttributesImpl
CyAttributesUtils
CyNetworkUtilities	This class provides static methods that operate on a CyNetwork to perform various useful tasks.
ExpressionData	This class provides a reader for the common file format for expression data and an interface to access the data.
ImportHandler	Central registry for all Cytoscape import classes.
Interaction	Interaction.java: protein-protein or protein-DNA: parse text file, encapsulate
mRNAMeasurement
NetworkData	There is an event fired anytime that a value is modified, you need to be listener to the attribute name though.
SelectEvent	Events that are fired when the selected state of a Node or Edge, or a group of Nodes or Edges, is changed.
SelectFilter	This class implements the ability to set the selected state of every node or edge in a GraphPerspective.
Semantics	This class defines names for certain data attributes that are commonly used within Cytoscape.

Enum Summary

CyAttributesUtils.AttributeType

Package cytoscape.data Description

Basic data classes used by Cytoscape. This is also the superpackage for other packages that contain special types of data-related classes.