Cytoscape 2.8.0 API

Package cytoscape.data.readers

Reader classes for the basic data types in cytoscape.data.

See:
          Description

Interface Summary
GraphReader Interface for Reading in Cytoscape Graphs.
NestedNetworkReader Special interface for Graph readers which read nested networks from a file.
 

Class Summary
AbstractGraphReader  
BookmarkReader  
CyAttributesReader  
CytoscapeSessionReader Reader to load CYtoscape Session file (.cys).
This class unzip cys file and read all files in the archive.
EqnAttrTracker  
GMLNode This class represents a GMLNode.
GMLParser The purpose of this class is to translate GML into an object tree, and print out an object tree into GML
GMLReader This class is responsible for converting a gml object tree into cytoscape objects New features to the current version: 1.
GMLTree This class wraps around GMLNode and provides various methods for constructing a tree structure given other data.
GMLWriter The purpse of this class is to translate cytoscape data structures into a gml object tree, we can then use the gml parser to write this tree out into a file
InteractionsReader Reader for graphs in the interactions file format.
KeyValue Key and Value pair in GML file.
MetadataParser Manipulates network metadata for loading and saving.
NNFParser Parser for NNF files.
NNFReader Graph file reader for NNF files.
TextFileReader  
TextHttpReader  
TextJarReader  
VisualStyleBuilder Based on the graph/node/edge view information, build new Visual Style.
XGMMLReader XGMML file reader.
This version is Metanode-compatible.
 

Enum Summary
GMLTag  
MetadataEntries Entries in the network metadata.
This is the list of entries in the network metadata object.
 

Exception Summary
GMLException Exception for GML Reader.
XGMMLException Exception for XGMML Reader.
 

Package cytoscape.data.readers Description

Reader classes for the basic data types in cytoscape.data.


Cytoscape 2.8.0 API

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