Package cytoscape.data.readers

Reader classes for the basic data types in cytoscape.data.

See:
Description

Interface Summary

GraphReader	Interface for Reading in Cytoscape Graphs.
NestedNetworkReader	Special interface for Graph readers which read nested networks from a file.

Class Summary

AbstractGraphReader
BookmarkReader
CyAttributesReader
CytoscapeSessionReader	Reader to load CYtoscape Session file (.cys). This class unzip cys file and read all files in the archive.
EqnAttrTracker
GMLNode	This class represents a GMLNode.
GMLParser	The purpose of this class is to translate GML into an object tree, and print out an object tree into GML
GMLReader	This class is responsible for converting a gml object tree into cytoscape objects New features to the current version: 1.
GMLTree	This class wraps around GMLNode and provides various methods for constructing a tree structure given other data.
GMLWriter	The purpse of this class is to translate cytoscape data structures into a gml object tree, we can then use the gml parser to write this tree out into a file
InteractionsReader	Reader for graphs in the interactions file format.
KeyValue	Key and Value pair in GML file.
MetadataParser	Manipulates network metadata for loading and saving.
NNFParser	Parser for NNF files.
NNFReader	Graph file reader for NNF files.
TextFileReader
TextHttpReader
TextJarReader
VisualStyleBuilder	Based on the graph/node/edge view information, build new Visual Style.
XGMMLReader	XGMML file reader. This version is Metanode-compatible.

Enum Summary

GMLTag
MetadataEntries	Entries in the network metadata. This is the list of entries in the network metadata object.

Exception Summary

GMLException	Exception for GML Reader.
XGMMLException	Exception for XGMML Reader.

Package cytoscape.data.readers Description

Reader classes for the basic data types in cytoscape.data.