cytoscape.data.servers
Interface BioDataServerInterface

All Superinterfaces:

Remote

All Known Implementing Classes:

BioDataServerRmi

public interface BioDataServerInterface
extends Remote

Method Summary

void	addAnnotation(Annotation annotation) DOCUMENT ME!
void	addThesaurus(String species, Thesaurus thesaurus) DOCUMENT ME!
void	clear() DOCUMENT ME!
String	describe() DOCUMENT ME!
String[][]	getAllAnnotations(AnnotationDescription description, String entity) DOCUMENT ME!
String[]	getAllCommonNames(String species, String commonName) DOCUMENT ME!
Annotation	getAnnotation(AnnotationDescription description) DOCUMENT ME!
Annotation	getAnnotation(String species, String curator, String type) DOCUMENT ME!
int	getAnnotationCount() DOCUMENT ME!
AnnotationDescription[]	getAnnotationDescriptions() DOCUMENT ME!
String	getCanonicalName(String species, String commonName) DOCUMENT ME!
int[]	getClassifications(AnnotationDescription description, String entity) DOCUMENT ME!
int[]	getClassifications(String species, String curator, String type, String entity) DOCUMENT ME!
String	getCommonName(String species, String canonicalName) DOCUMENT ME!

Method Detail

addAnnotation

void addAnnotation(Annotation annotation)
                   throws Exception

DOCUMENT ME!

Parameters:

annotation - DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

getAnnotationCount

int getAnnotationCount()
                       throws Exception

DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

getAnnotationDescriptions

AnnotationDescription[] getAnnotationDescriptions()
                                                  throws Exception

DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

getAnnotation

Annotation getAnnotation(String species,
                         String curator,
                         String type)
                         throws Exception

DOCUMENT ME!

Parameters:

species - DOCUMENT ME!

curator - DOCUMENT ME!

type - DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

getAnnotation

Annotation getAnnotation(AnnotationDescription description)
                         throws Exception

DOCUMENT ME!

Parameters:

description - DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

getClassifications

int[] getClassifications(String species,
                         String curator,
                         String type,
                         String entity)
                         throws Exception

DOCUMENT ME!

Parameters:

species - DOCUMENT ME!

curator - DOCUMENT ME!

type - DOCUMENT ME!

entity - DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

getClassifications

int[] getClassifications(AnnotationDescription description,
                         String entity)
                         throws Exception

DOCUMENT ME!

Parameters:

description - DOCUMENT ME!

entity - DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

getAllAnnotations

String[][] getAllAnnotations(AnnotationDescription description,
                             String entity)
                             throws Exception

DOCUMENT ME!

Parameters:

description - DOCUMENT ME!

entity - DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

clear

void clear()
           throws Exception

DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

describe

String describe()
                throws Exception

DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

addThesaurus

void addThesaurus(String species,
                  Thesaurus thesaurus)
                  throws Exception

DOCUMENT ME!

Parameters:

species - DOCUMENT ME!

thesaurus - DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

getCanonicalName

String getCanonicalName(String species,
                        String commonName)
                        throws Exception

DOCUMENT ME!

Parameters:

species - DOCUMENT ME!

commonName - DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

getAllCommonNames

String[] getAllCommonNames(String species,
                           String commonName)
                           throws Exception

DOCUMENT ME!

Parameters:

species - DOCUMENT ME!

commonName - DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!

getCommonName

String getCommonName(String species,
                     String canonicalName)
                     throws Exception

DOCUMENT ME!

Parameters:

species - DOCUMENT ME!

canonicalName - DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

Exception - DOCUMENT ME!