cytoscape.ding
Class DingNetworkView

java.lang.Object
  ding.view.DGraphView
      cytoscape.ding.DingNetworkView

All Implemented Interfaces:

CyNetworkView, GraphView, Printable, PropertyChangeListener, EventListener

public class DingNetworkView
extends DGraphView
implements CyNetworkView, PropertyChangeListener

Extended version of DGraphView defined in Ding.

Nested Class Summary

Nested classes/interfaces inherited from class ding.view.DGraphView

DGraphView.Canvas, DGraphView.ShapeType

Field Summary

static String

NESTED_NETWORK_SNAPSHOT_SIZE_PROP A string used to specify the number of pixels wide and high the nested network image should be.

Fields inherited from class ding.view.DGraphView

DEF_SNAPSHOT_SIZE

Fields inherited from interface giny.view.GraphView

EDGE_LINE_TYPE, EDGE_PAINT, EDGE_SELECTION_PAINT, EDGE_SOURCE_END_PAINT, EDGE_SOURCE_END_SELECTED_PAINT, EDGE_SOURCE_END_TYPE, EDGE_TARGET_END_PAINT, EDGE_TARGET_END_SELECTED_PAINT, EDGE_TARGET_END_TYPE, EDGE_WIDTH, NODE_BORDER_PAINT, NODE_BORDER_WIDTH, NODE_HEIGHT, NODE_LABEL, NODE_PAINT, NODE_SELECTION_PAINT, NODE_SHAPE, NODE_WIDTH, NODE_X_POSITION, NODE_Y_POSITION, NODE_Z_POSITION, SOURCE_INDEX, TARGET_INDEX

Fields inherited from interface java.awt.print.Printable

NO_SUCH_PAGE, PAGE_EXISTS

Constructor Summary

DingNetworkView(CyNetwork network, String title)
Creates a new DingNetworkView object.

Method Summary

void	applyLayout(CyLayoutAlgorithm layout) DOCUMENT ME!
void	applyLayout(CyLayoutAlgorithm layout, CyNode[] nodes, CyEdge[] edges) DOCUMENT ME!
void	applyLayout(CyLayoutAlgorithm layout, CyNodeView[] nodes, CyEdgeView[] edges) DOCUMENT ME!
void	applyLayout(CyLayoutAlgorithm layout, int[] nodes, int[] edges) DOCUMENT ME!
void	applyLockedLayout(CyLayoutAlgorithm layout, CyNode[] nodes, CyEdge[] edges) DOCUMENT ME!
void	applyLockedLayout(CyLayoutAlgorithm layout, CyNodeView[] nodes, CyEdgeView[] edges) DOCUMENT ME!
void	applyLockedLayout(CyLayoutAlgorithm layout, int[] nodes, int[] edges) DOCUMENT ME!
boolean	applyVizMap(CyEdge edge) DOCUMENT ME!
boolean	applyVizMap(CyEdge edge, VisualStyle style) DOCUMENT ME!
boolean	applyVizMap(CyNode node) DOCUMENT ME!
boolean	applyVizMap(CyNode node, VisualStyle style) DOCUMENT ME!
boolean	applyVizMap(EdgeView edge_view) DOCUMENT ME!
boolean	applyVizMap(EdgeView edge_view, VisualStyle style) DOCUMENT ME!
boolean	applyVizMap(NodeView node_view) DOCUMENT ME!
boolean	applyVizMap(NodeView node_view, VisualStyle style) DOCUMENT ME!
void	applyVizmapper(VisualStyle style) DOCUMENT ME!
Object	getClientData(String data_name) DOCUMENT ME!
Collection	getClientDataNames() DOCUMENT ME!
CyNetwork	getNetwork() DOCUMENT ME!
List	getNodeViewsList() DOCUMENT ME!
String	getTitle() DOCUMENT ME!
CyNetworkView	getView() DOCUMENT ME!
boolean	getVisualMapperEnabled() DOCUMENT ME!
VisualStyle	getVisualStyle() DOCUMENT ME!
VisualMappingManager	getVizMapManager() DOCUMENT ME!
void	propertyChange(PropertyChangeEvent e)
void	putClientData(String data_name, Object data) DOCUMENT ME!
void	redrawGraph(boolean layout, boolean vizmap) Apply visual style and redraw graph.
boolean	setSelected(CyEdge[] edges) DOCUMENT ME!
boolean	setSelected(CyNode[] nodes) DOCUMENT ME!
boolean	setSelected(EdgeView[] edge_views) DOCUMENT ME!
boolean	setSelected(NodeView[] node_views) DOCUMENT ME!
void	setTitle(String title) DOCUMENT ME!
void	setVisualMapperEnabled(boolean state) DOCUMENT ME!
void	setVisualStyle(String vsName) DOCUMENT ME!
void	toggleVisualMapperEnabled() DOCUMENT ME!

Methods inherited from class ding.view.DGraphView

addContentChangeListener, addContextMethod, addEdgeContextMenuListener, addEdgeView, addEdgeView, addGraphViewChangeListener, addNodeContextMenuListener, addNodeView, addNodeView, addNodeView, addViewportChangeListener, createImage, disableEdgeSelection, disableNodeSelection, drawSnapshot, edgeCount, edgeSelectionEnabled, enableEdgeSelection, enableNodeSelection, fitContent, fitSelected, getAllEdgePropertyData, getAllNodePropertyData, getAnchorSelectedPaint, getAnchorSize, getAnchorUnselectedPaint, getArrowShapes, getBackgroundPaint, getCanvas, getCanvas, getCenter, getComponent, getContextMethods, getContextMethods, getEdgeBooleanProperty, getEdgeDoubleProperty, getEdgeFloatProperty, getEdgeIntProperty, getEdgeObjectProperty, getEdgeView, getEdgeView, getEdgeViewCount, getEdgeViewsIterator, getEdgeViewsList, getEdgeViewsList, getEdgeViewsList, getExtents, getGraphLOD, getGraphPerspective, getIdentifier, getLock, getNodeBooleanProperty, getNodeDoubleProperty, getNodeFloatProperty, getNodeIntProperty, getNodeObjectProperty, getNodeShapes, getNodesIntersectingRectangle, getNodeView, getNodeView, getNodeViewCount, getNodeViewsIterator, getPickedEdgeView, getPickedNodeView, getRootGraph, getSelectedEdgeIndices, getSelectedEdges, getSelectedNodeIndices, getSelectedNodes, getZoom, hideGraphObject, hideGraphObjects, nodeCount, nodeSelectionEnabled, print, queryDrawnEdges, removeContentChangeListener, removeEdgeContextMenuListener, removeEdgeView, removeEdgeView, removeEdgeView, removeGraphViewChangeListener, removeNodeContextMenuListener, removeNodeView, removeNodeView, removeNodeView, removeViewportChangeListener, setAllEdgePropertyData, setAllNodePropertyData, setBackgroundPaint, setCenter, setEdgeBooleanProperty, setEdgeDoubleProperty, setEdgeFloatProperty, setEdgeIntProperty, setEdgeObjectProperty, setGraphLOD, setIdentifier, setNodeBooleanProperty, setNodeDoubleProperty, setNodeFloatProperty, setNodeIntProperty, setNodeObjectProperty, setPrintingTextAsShape, setViewportChanged, setZoom, showGraphObject, showGraphObjects, updateView, xformComponentToNodeCoords

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface cytoscape.view.CyNetworkView

addEdgeContextMenuListener, addNodeContextMenuListener, removeEdgeContextMenuListener, removeNodeContextMenuListener

Methods inherited from interface giny.view.GraphView

addContextMethod, addEdgeView, addEdgeView, addGraphViewChangeListener, addNodeView, addNodeView, addNodeView, disableEdgeSelection, disableNodeSelection, edgeCount, edgeSelectionEnabled, enableEdgeSelection, enableNodeSelection, fitContent, getAllEdgePropertyData, getAllNodePropertyData, getBackgroundPaint, getComponent, getContextMethods, getContextMethods, getEdgeBooleanProperty, getEdgeDoubleProperty, getEdgeFloatProperty, getEdgeIntProperty, getEdgeObjectProperty, getEdgeView, getEdgeView, getEdgeViewCount, getEdgeViewsIterator, getEdgeViewsList, getEdgeViewsList, getEdgeViewsList, getGraphPerspective, getIdentifier, getNodeBooleanProperty, getNodeDoubleProperty, getNodeFloatProperty, getNodeIntProperty, getNodeObjectProperty, getNodeView, getNodeView, getNodeViewCount, getNodeViewsIterator, getRootGraph, getSelectedEdgeIndices, getSelectedEdges, getSelectedNodeIndices, getSelectedNodes, getZoom, hideGraphObject, hideGraphObjects, nodeCount, nodeSelectionEnabled, removeEdgeView, removeEdgeView, removeEdgeView, removeGraphViewChangeListener, removeNodeView, removeNodeView, removeNodeView, setAllEdgePropertyData, setAllNodePropertyData, setBackgroundPaint, setEdgeBooleanProperty, setEdgeDoubleProperty, setEdgeFloatProperty, setEdgeIntProperty, setEdgeObjectProperty, setIdentifier, setNodeBooleanProperty, setNodeDoubleProperty, setNodeFloatProperty, setNodeIntProperty, setNodeObjectProperty, setZoom, showGraphObject, showGraphObjects, updateView

Field Detail

NESTED_NETWORK_SNAPSHOT_SIZE_PROP

public static final String NESTED_NETWORK_SNAPSHOT_SIZE_PROP

A string used to specify the number of pixels wide and high the nested network image should be.

See Also:

Constant Field Values

Constructor Detail

DingNetworkView

public DingNetworkView(CyNetwork network,
                       String title)

Creates a new DingNetworkView object.

Parameters:

network - DOCUMENT ME!

title - DOCUMENT ME!

Method Detail

setVisualStyle

public void setVisualStyle(String vsName)

DOCUMENT ME!

Specified by:

setVisualStyle in interface CyNetworkView

Parameters:

vsName - DOCUMENT ME!

getVisualStyle

public VisualStyle getVisualStyle()

DOCUMENT ME!

Specified by:

getVisualStyle in interface CyNetworkView

Returns:

DOCUMENT ME!

getNetwork

public CyNetwork getNetwork()

DOCUMENT ME!

Specified by:

getNetwork in interface CyNetworkView

Returns:

DOCUMENT ME!

setTitle

public void setTitle(String title)

DOCUMENT ME!

Specified by:

setTitle in interface CyNetworkView

Parameters:

title - DOCUMENT ME!

getTitle

public String getTitle()

DOCUMENT ME!

Specified by:

getTitle in interface CyNetworkView

Returns:

DOCUMENT ME!

redrawGraph

public void redrawGraph(boolean layout,
                        boolean vizmap)

Apply visual style and redraw graph.

Specified by:

redrawGraph in interface CyNetworkView

Parameters:

layout - Always ignored!

vizmap - Always ignored!

getView

public CyNetworkView getView()

DOCUMENT ME!

Specified by:

getView in interface CyNetworkView

Returns:

DOCUMENT ME!

getVizMapManager

public VisualMappingManager getVizMapManager()

DOCUMENT ME!

Specified by:

getVizMapManager in interface CyNetworkView

Returns:

DOCUMENT ME!

toggleVisualMapperEnabled

public void toggleVisualMapperEnabled()

DOCUMENT ME!

Specified by:

toggleVisualMapperEnabled in interface CyNetworkView

setVisualMapperEnabled

public void setVisualMapperEnabled(boolean state)

DOCUMENT ME!

Specified by:

setVisualMapperEnabled in interface CyNetworkView

Parameters:

state - DOCUMENT ME!

getVisualMapperEnabled

public boolean getVisualMapperEnabled()

DOCUMENT ME!

Specified by:

getVisualMapperEnabled in interface CyNetworkView

Returns:

DOCUMENT ME!

putClientData

public void putClientData(String data_name,
                          Object data)

DOCUMENT ME!

Specified by:

putClientData in interface CyNetworkView

Parameters:

data_name - DOCUMENT ME!

data - DOCUMENT ME!

getClientDataNames

public Collection getClientDataNames()

DOCUMENT ME!

Specified by:

getClientDataNames in interface CyNetworkView

Returns:

DOCUMENT ME!

getClientData

public Object getClientData(String data_name)

DOCUMENT ME!

Specified by:

getClientData in interface CyNetworkView

Parameters:

data_name - DOCUMENT ME!

Returns:

DOCUMENT ME!

setSelected

public boolean setSelected(CyNode[] nodes)

DOCUMENT ME!

Specified by:

setSelected in interface CyNetworkView

Parameters:

nodes - DOCUMENT ME!

Returns:

DOCUMENT ME!

setSelected

public boolean setSelected(NodeView[] node_views)

DOCUMENT ME!

Specified by:

setSelected in interface CyNetworkView

Parameters:

node_views - DOCUMENT ME!

Returns:

DOCUMENT ME!

applyVizMap

public boolean applyVizMap(CyEdge edge)

DOCUMENT ME!

Specified by:

applyVizMap in interface CyNetworkView

Parameters:

edge - DOCUMENT ME!

Returns:

DOCUMENT ME!

applyVizMap

public boolean applyVizMap(EdgeView edge_view)

DOCUMENT ME!

Specified by:

applyVizMap in interface CyNetworkView

Parameters:

edge_view - DOCUMENT ME!

Returns:

DOCUMENT ME!

applyVizMap

public boolean applyVizMap(CyNode node)

DOCUMENT ME!

Specified by:

applyVizMap in interface CyNetworkView

Parameters:

node - DOCUMENT ME!

Returns:

DOCUMENT ME!

applyVizMap

public boolean applyVizMap(NodeView node_view)

DOCUMENT ME!

Specified by:

applyVizMap in interface CyNetworkView

Parameters:

node_view - DOCUMENT ME!

Returns:

DOCUMENT ME!

applyVizMap

public boolean applyVizMap(CyEdge edge,
                           VisualStyle style)

DOCUMENT ME!

Specified by:

applyVizMap in interface CyNetworkView

Parameters:

edge - DOCUMENT ME!

style - DOCUMENT ME!

Returns:

DOCUMENT ME!

applyVizMap

public boolean applyVizMap(EdgeView edge_view,
                           VisualStyle style)

DOCUMENT ME!

Specified by:

applyVizMap in interface CyNetworkView

Parameters:

edge_view - DOCUMENT ME!

style - DOCUMENT ME!

Returns:

DOCUMENT ME!

applyVizMap

public boolean applyVizMap(CyNode node,
                           VisualStyle style)

DOCUMENT ME!

Specified by:

applyVizMap in interface CyNetworkView

Parameters:

node - DOCUMENT ME!

style - DOCUMENT ME!

Returns:

DOCUMENT ME!

applyVizMap

public boolean applyVizMap(NodeView node_view,
                           VisualStyle style)

DOCUMENT ME!

Specified by:

applyVizMap in interface CyNetworkView

Parameters:

node_view - DOCUMENT ME!

style - DOCUMENT ME!

Returns:

DOCUMENT ME!

setSelected

public boolean setSelected(CyEdge[] edges)

DOCUMENT ME!

Specified by:

setSelected in interface CyNetworkView

Parameters:

edges - DOCUMENT ME!

Returns:

DOCUMENT ME!

setSelected

public boolean setSelected(EdgeView[] edge_views)

DOCUMENT ME!

Specified by:

setSelected in interface CyNetworkView

Parameters:

edge_views - DOCUMENT ME!

Returns:

DOCUMENT ME!

applyVizmapper

public void applyVizmapper(VisualStyle style)

DOCUMENT ME!

Specified by:

applyVizmapper in interface CyNetworkView

Parameters:

style - DOCUMENT ME!

applyLayout

public void applyLayout(CyLayoutAlgorithm layout)

DOCUMENT ME!

Specified by:

applyLayout in interface CyNetworkView

Parameters:

layout - DOCUMENT ME!

applyLockedLayout

public void applyLockedLayout(CyLayoutAlgorithm layout,
                              CyNode[] nodes,
                              CyEdge[] edges)

DOCUMENT ME!

Specified by:

applyLockedLayout in interface CyNetworkView

Parameters:

layout - DOCUMENT ME!

nodes - DOCUMENT ME!

edges - DOCUMENT ME!

applyLayout

public void applyLayout(CyLayoutAlgorithm layout,
                        CyNode[] nodes,
                        CyEdge[] edges)

DOCUMENT ME!

Specified by:

applyLayout in interface CyNetworkView

Parameters:

layout - DOCUMENT ME!

nodes - DOCUMENT ME!

edges - DOCUMENT ME!

getNodeViewsList

public List getNodeViewsList()

DOCUMENT ME!

Returns:

DOCUMENT ME!

applyLockedLayout

public void applyLockedLayout(CyLayoutAlgorithm layout,
                              CyNodeView[] nodes,
                              CyEdgeView[] edges)

DOCUMENT ME!

Specified by:

applyLockedLayout in interface CyNetworkView

Parameters:

layout - DOCUMENT ME!

nodes - DOCUMENT ME!

edges - DOCUMENT ME!

applyLayout

public void applyLayout(CyLayoutAlgorithm layout,
                        CyNodeView[] nodes,
                        CyEdgeView[] edges)

DOCUMENT ME!

Specified by:

applyLayout in interface CyNetworkView

Parameters:

layout - DOCUMENT ME!

nodes - DOCUMENT ME!

edges - DOCUMENT ME!

applyLockedLayout

public void applyLockedLayout(CyLayoutAlgorithm layout,
                              int[] nodes,
                              int[] edges)

DOCUMENT ME!

Specified by:

applyLockedLayout in interface CyNetworkView

Parameters:

layout - DOCUMENT ME!

nodes - DOCUMENT ME!

edges - DOCUMENT ME!

applyLayout

public void applyLayout(CyLayoutAlgorithm layout,
                        int[] nodes,
                        int[] edges)

DOCUMENT ME!

Specified by:

applyLayout in interface CyNetworkView

Parameters:

layout - DOCUMENT ME!

nodes - DOCUMENT ME!

edges - DOCUMENT ME!

propertyChange

public void propertyChange(PropertyChangeEvent e)

Specified by:

propertyChange in interface PropertyChangeListener