cytoscape.view
Class NetworkPanel

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  cytoscape.view.NetworkPanel

All Implemented Interfaces:

SelectEventListener, ImageObserver, MenuContainer, PropertyChangeListener, Serializable, EventListener, Accessible, ChangeListener, TreeSelectionListener

public class NetworkPanel
extends JPanel
implements PropertyChangeListener, TreeSelectionListener, SelectEventListener, ChangeListener

GUI component for managing network list in current session.

See Also:

Serialized Form

Nested Class Summary

protected class

NetworkPanel.PopupListener This class listens to mouse events from the TreeTable, if the mouse event is one that is canonically associated with a popup menu (ie, a right click) it will pop up the menu with option for destroying view, creating view, and destroying network (this is platform specific apparently)

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

NetworkPanel(CytoscapeDesktop desktop)
Constructor for the Network Panel.

Method Summary

void	addNetwork(String network_id, String parent_id) DOCUMENT ME!
void	focusNetworkNode(String network_id) DOCUMENT ME!
JPanel	getNavigatorPanel() DOCUMENT ME!
NetworkTreeNode	getNetworkNode(String network_id) DOCUMENT ME!
SwingPropertyChangeSupport	getSwingPropertyChangeSupport() DOCUMENT ME!
JTreeTable	getTreeTable() This is used by Session writer.
void	onSelectEvent(SelectEvent event) DOCUMENT ME!
void	propertyChange(PropertyChangeEvent e) DOCUMENT ME!
void	removeNetwork(String network_id) Remove a network from the panel.
void	setNavigator(Component comp) DOCUMENT ME!
void	stateChanged(ChangeEvent e)
void	updateTitle(CyNetwork network) update a network title
void	valueChanged(TreeSelectionEvent e) This method highlights a network in the NetworkPanel.

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

NetworkPanel

public NetworkPanel(CytoscapeDesktop desktop)

Constructor for the Network Panel.

Parameters:

desktop -

Method Detail

setNavigator

public void setNavigator(Component comp)

DOCUMENT ME!

Parameters:

comp - DOCUMENT ME!

getTreeTable

public JTreeTable getTreeTable()

This is used by Session writer.

Returns:

getNavigatorPanel

public JPanel getNavigatorPanel()

DOCUMENT ME!

Returns:

DOCUMENT ME!

getSwingPropertyChangeSupport

public SwingPropertyChangeSupport getSwingPropertyChangeSupport()

DOCUMENT ME!

Returns:

DOCUMENT ME!

removeNetwork

public void removeNetwork(String network_id)

Remove a network from the panel.

Parameters:

network_id -

updateTitle

public void updateTitle(CyNetwork network)

update a network title

onSelectEvent

public void onSelectEvent(SelectEvent event)

DOCUMENT ME!

Specified by:

onSelectEvent in interface SelectEventListener

Parameters:

event - DOCUMENT ME!

addNetwork

public void addNetwork(String network_id,
                       String parent_id)

DOCUMENT ME!

Parameters:

network_id - DOCUMENT ME!

parent_id - DOCUMENT ME!

focusNetworkNode

public void focusNetworkNode(String network_id)

DOCUMENT ME!

Parameters:

network_id - DOCUMENT ME!

getNetworkNode

public NetworkTreeNode getNetworkNode(String network_id)

DOCUMENT ME!

Parameters:

network_id - DOCUMENT ME!

Returns:

DOCUMENT ME!

valueChanged

public void valueChanged(TreeSelectionEvent e)

This method highlights a network in the NetworkPanel.

Specified by:

valueChanged in interface TreeSelectionListener

Parameters:

e - DOCUMENT ME!

propertyChange

public void propertyChange(PropertyChangeEvent e)

DOCUMENT ME!

Specified by:

propertyChange in interface PropertyChangeListener

Parameters:

e - DOCUMENT ME!

stateChanged

public void stateChanged(ChangeEvent e)

Specified by:

stateChanged in interface ChangeListener