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Cytoscape 3.0.0-beta1 API | |||||||||
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public interface CyAppAdapter
A Java-only api providing access to Cytoscape functionality. This class will provide access the various core Manager and Factory interfaces defined in different API jars that are normally made available to apps as OSGi services. Through these interfaces developers will have access to most management and creational facilities defined in the Cytoscape API, however this interface omits all Swing or GUI specific services so that apps may be written to be independent of the UI. For Swing and GUI related services see CySwingAppAdapter. This is a convenience interface intended make app development as simple as possible.
Method Detail |
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CyNetworkFactory getCyNetworkFactory()
CyNetworkFactory
.
CyNetworkFactory
.CyTableFactory getCyTableFactory()
CyTableFactory
.
CyTableFactory
.CyTableManager getCyTableManager()
CyTableManager
.
CyTableManager
.CyRootNetworkManager getCyRootNetworkFactory()
CyRootNetworkManager
.
CyRootNetworkManager
.CyEventHelper getCyEventHelper()
CyEventHelper
.
CyEventHelper
.CyNetworkManager getCyNetworkManager()
CyNetworkManager
.
CyNetworkManager
.CyGroupFactory getCyGroupFactory()
CyGroupFactory
.
CyGroupFactory
.CyGroupAggregationManager getCyGroupAggregationManager()
CyGroupAggregationManager
.
CyGroupAggregationManager
.CyGroupManager getCyGroupManager()
CyGroupManager
.
CyGroupManager
.CyNetworkViewFactory getCyNetworkViewFactory()
CyNetworkViewFactory
.
CyNetworkViewFactory
.CyNetworkViewManager getCyNetworkViewManager()
CyNetworkViewManager
.
CyNetworkViewManager
.CyApplicationManager getCyApplicationManager()
CyApplicationManager
.
CyApplicationManager
.CySessionManager getCySessionManager()
CySessionManager
.
CySessionManager
.TaskManager getTaskManager()
TaskManager
.
TaskManager
.UndoSupport getUndoSupport()
UndoSupport
.
UndoSupport
.RenderingEngineManager getRenderingEngineManager()
RenderingEngineManager
.
RenderingEngineManager
.VisualMappingManager getVisualMappingManager()
VisualMappingManager
.
VisualMappingManager
.VisualStyleFactory getVisualStyleFactory()
VisualStyleFactory
.
VisualStyleFactory
.VisualMappingFunctionFactory getVisualMappingFunctionContinuousFactory()
VisualMappingFunctionFactory
.
VisualMappingFunctionFactory
.VisualMappingFunctionFactory getVisualMappingFunctionDiscreteFactory()
VisualMappingFunctionFactory
.
VisualMappingFunctionFactory
.VisualMappingFunctionFactory getVisualMappingFunctionPassthroughFactory()
VisualMappingFunctionFactory
.
VisualMappingFunctionFactory
.CyLayoutAlgorithmManager getCyLayoutAlgorithmManager()
CyLayoutAlgorithmManager
.
CyLayoutAlgorithmManager
.CyProperty<Properties> getCoreProperties()
CyProperty
of type Properties.
CyProperty
of type Properties.CyNetworkReaderManager getCyNetworkViewReaderManager()
CyNetworkReaderManager
.
CyNetworkReaderManager
.CyPropertyReaderManager getCyPropertyReaderManager()
CyPropertyReaderManager
.
CyPropertyReaderManager
.CySessionReaderManager getCySessionReaderManager()
CySessionReaderManager
.
CySessionReaderManager
.CyTableReaderManager getCyTableReaderManager()
CyTableReaderManager
.
CyTableReaderManager
.CyNetworkViewWriterManager getCyNetworkViewWriterManager()
CyNetworkViewWriterManager
.
CyNetworkViewWriterManager
.CyPropertyWriterManager getCyPropertyWriterManager()
CyPropertyWriterManager
.
CyPropertyWriterManager
.CySessionWriterManager getCySessionWriterManager()
CySessionWriterManager
.
CySessionWriterManager
.CyTableWriterManager getCyTableWriterManager()
CyTableWriterManager
.
CyTableWriterManager
.PresentationWriterManager getPresentationWriterManager()
PresentationWriterManager
.
PresentationWriterManager
.CyServiceRegistrar getCyServiceRegistrar()
CyServiceRegistrar
.
CyServiceRegistrar
.CyVersion getCyVersion()
CyVersion
.
CyVersion
.DataSourceManager getDataSourceManager()
DataSourceManager
.
DataSourceManager
.ApplyVisualStyleTaskFactory get_ApplyVisualStyleTaskFactory()
ApplyVisualStyleTaskFactory
.
ApplyVisualStyleTaskFactory
.MapGlobalToLocalTableTaskFactory get_MapGlobalToLocalTableTaskFactory()
MapGlobalToLocalTableTaskFactory
.
MapGlobalToLocalTableTaskFactory
.LoadNetworkFileTaskFactory get_LoadNetworkFileTaskFactory()
LoadNetworkFileTaskFactory
.
LoadNetworkFileTaskFactory
.LoadNetworkURLTaskFactory get_LoadNetworkURLTaskFactory()
LoadNetworkURLTaskFactory
.
LoadNetworkURLTaskFactory
.LoadVizmapFileTaskFactory get_LoadVizmapFileTaskFactory()
LoadVizmapFileTaskFactory
.
LoadVizmapFileTaskFactory
.LoadTableFileTaskFactory get_LoadTableFileTaskFactory()
LoadTableFileTaskFactory
.
LoadTableFileTaskFactory
.LoadTableURLTaskFactory get_LoadTableURLTaskFactory()
LoadTableURLTaskFactory
.
LoadTableURLTaskFactory
.DeleteSelectedNodesAndEdgesTaskFactory get_DeleteSelectedNodesAndEdgesTaskFactory()
DeleteSelectedNodesAndEdgesTaskFactory
.
DeleteSelectedNodesAndEdgesTaskFactory
.SelectAllTaskFactory get_SelectAllTaskFactory()
SelectAllTaskFactory
.
SelectAllTaskFactory
.SelectAllEdgesTaskFactory get_SelectAllEdgesTaskFactory()
SelectAllEdgesTaskFactory
.
SelectAllEdgesTaskFactory
.SelectAllNodesTaskFactory get_SelectAllNodesTaskFactory()
SelectAllNodesTaskFactory
.
SelectAllNodesTaskFactory
.SelectAdjacentEdgesTaskFactory get_SelectAdjacentEdgesTaskFactory()
SelectAdjacentEdgesTaskFactory
.
SelectAdjacentEdgesTaskFactory
.SelectConnectedNodesTaskFactory get_SelectConnectedNodesTaskFactory()
SelectConnectedNodesTaskFactory
.
SelectConnectedNodesTaskFactory
.SelectFirstNeighborsTaskFactory get_SelectFirstNeighborsTaskFactory()
SelectFirstNeighborsTaskFactory
.
SelectFirstNeighborsTaskFactory
.SelectFirstNeighborsTaskFactory get_SelectFirstNeighborsTaskFactoryInEdge()
SelectFirstNeighborsTaskFactory
.
SelectFirstNeighborsTaskFactory
.SelectFirstNeighborsTaskFactory get_SelectFirstNeighborsTaskFactoryOutEdge()
SelectFirstNeighborsTaskFactory
.
SelectFirstNeighborsTaskFactory
.DeselectAllTaskFactory get_DeselectAllTaskFactory()
DeselectAllTaskFactory
.
DeselectAllTaskFactory
.DeselectAllEdgesTaskFactory get_DeselectAllEdgesTaskFactory()
DeselectAllEdgesTaskFactory
.
DeselectAllEdgesTaskFactory
.DeselectAllNodesTaskFactory get_DeselectAllNodesTaskFactory()
DeselectAllNodesTaskFactory
.
DeselectAllNodesTaskFactory
.InvertSelectedEdgesTaskFactory get_InvertSelectedEdgesTaskFactory()
InvertSelectedEdgesTaskFactory
.
InvertSelectedEdgesTaskFactory
.InvertSelectedNodesTaskFactory get_InvertSelectedNodesTaskFactory()
InvertSelectedNodesTaskFactory
.
InvertSelectedNodesTaskFactory
.SelectFromFileListTaskFactory get_SelectFromFileListTaskFactory()
SelectFromFileListTaskFactory
.
SelectFromFileListTaskFactory
.SelectFirstNeighborsNodeViewTaskFactory get_SelectFirstNeighborsNodeViewTaskFactory()
SelectFirstNeighborsNodeViewTaskFactory
.
SelectFirstNeighborsNodeViewTaskFactory
.HideSelectedTaskFactory get_HideSelectedTaskFactory()
HideSelectedTaskFactory
.
HideSelectedTaskFactory
.HideSelectedNodesTaskFactory get_HideSelectedNodesTaskFactory()
HideSelectedNodesTaskFactory
.
HideSelectedNodesTaskFactory
.HideSelectedEdgesTaskFactory get_HideSelectedEdgesTaskFactory()
HideSelectedEdgesTaskFactory
.
HideSelectedEdgesTaskFactory
.UnHideAllTaskFactory get_UnHideAllTaskFactory()
UnHideAllTaskFactory
.
UnHideAllTaskFactory
.UnHideAllNodesTaskFactory get_UnHideAllNodesTaskFactory()
UnHideAllNodesTaskFactory
.
UnHideAllNodesTaskFactory
.UnHideAllEdgesTaskFactory get_UnHideAllEdgesTaskFactory()
UnHideAllEdgesTaskFactory
.
UnHideAllEdgesTaskFactory
.NewEmptyNetworkViewFactory get_NewEmptyNetworkViewFactory()
NewEmptyNetworkViewFactory
.
NewEmptyNetworkViewFactory
.NewNetworkSelectedNodesAndEdgesTaskFatory get_NewNetworkSelectedNodesAndEdgesTaskFatory()
NewNetworkSelectedNodesAndEdgesTaskFatory
.
NewNetworkSelectedNodesAndEdgesTaskFatory
.NewNetworkSelectedNodesOnlyTaskFactory get_NewNetworkSelectedNodesOnlyTaskFactory()
NewNetworkSelectedNodesOnlyTaskFactory
.
NewNetworkSelectedNodesOnlyTaskFactory
.CloneNetworkTaskFactory get_CloneNetworkTaskFactory()
CloneNetworkTaskFactory
.
CloneNetworkTaskFactory
.DestroyNetworkTaskFactory get_DestroyNetworkTaskFactory()
DestroyNetworkTaskFactory
.
DestroyNetworkTaskFactory
.DestroyNetworkViewTaskFactory get_DestroyNetworkViewTaskFactory()
DestroyNetworkViewTaskFactory
.
DestroyNetworkViewTaskFactory
.EditNetworkTitleTaskFactory get_EditNetworkTitleTaskFactory()
EditNetworkTitleTaskFactory
.
EditNetworkTitleTaskFactory
.CreateNetworkViewTaskFactory get_CreateNetworkViewTaskFactory()
CreateNetworkViewTaskFactory
.
CreateNetworkViewTaskFactory
.ExportNetworkImageTaskFactory get_ExportNetworkImageTaskFactory()
ExportNetworkImageTaskFactory
.
ExportNetworkImageTaskFactory
.ExportNetworkViewTaskFactory get_ExportNetworkViewTaskFactory()
ExportNetworkViewTaskFactory
.
ExportNetworkViewTaskFactory
.ExportSelectedTableTaskFactory get_ExportSelectedTableTaskFactory()
ExportSelectedTableTaskFactory
.
ExportSelectedTableTaskFactory
.ExportTableTaskFactory get_ExportTableTaskFactory()
ExportTableTaskFactory
.
ExportTableTaskFactory
.ExportVizmapTaskFactory get_ExportVizmapTaskFactory()
ExportVizmapTaskFactory
.
ExportVizmapTaskFactory
.NewSessionTaskFactory get_NewSessionTaskFactory()
NewSessionTaskFactory
.
NewSessionTaskFactory
.OpenSessionTaskFactory get_OpenSessionTaskFactory()
OpenSessionTaskFactory
.
OpenSessionTaskFactory
.SaveSessionAsTaskFactory get_SaveSessionAsTaskFactory()
SaveSessionAsTaskFactory
.
SaveSessionAsTaskFactory
.ApplyPreferredLayoutTaskFactory get_ApplyPreferredLayoutTaskFactory()
ApplyPreferredLayoutTaskFactory
.
ApplyPreferredLayoutTaskFactory
.DeleteColumnTaskFactory get_DeleteColumnTaskFactory()
DeleteColumnTaskFactory
.
DeleteColumnTaskFactory
.RenameColumnTaskFactory get_RenameColumnTaskFactory()
RenameColumnTaskFactory
.
RenameColumnTaskFactory
.DeleteTableTaskFactory get_DeleteTableTaskFactory()
DeleteTableTaskFactory
.
DeleteTableTaskFactory
.ConnectSelectedNodesTaskFactory get_ConnectSelectedNodesTaskFactory()
ConnectSelectedNodesTaskFactory
.
ConnectSelectedNodesTaskFactory
.GroupNodesTaskFactory get_GroupNodesTaskFactory()
GroupNodesTaskFactory
.
GroupNodesTaskFactory
.UnGroupTaskFactory get_UnGroupTaskFactory()
UnGroupTaskFactory
.
UnGroupTaskFactory
.CollapseGroupTaskFactory get_CollapseGroupTaskFactory()
CollapseGroupTaskFactory
.
CollapseGroupTaskFactory
.ExpandGroupTaskFactory get_ExpandGroupTaskFactory()
ExpandGroupTaskFactory
.
ExpandGroupTaskFactory
.UnGroupNodesTaskFactory get_UnGroupNodesTaskFactory()
UnGroupNodesTaskFactory
.
UnGroupNodesTaskFactory
.MapTableToNetworkTablesTaskFactory get_MapTableToNetworkTablesTaskFactory()
MapTableToNetworkTablesTaskFactory
.
MapTableToNetworkTablesTaskFactory
.
|
Cytoscape 3.0.0-beta1 API | |||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |