| Package | Description |
|---|---|
| org.cytoscape.group.data |
An api for configuring
CyGroups. |
| org.cytoscape.model |
This package has the core interfaces of network and
table data structures that are foundational to Cytoscape.
|
| org.cytoscape.task |
This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
|
| org.cytoscape.task.edit |
This package include a set of task factory interfaces that allow
the modification or editing of various objects within Cytoscape.
|
| Modifier and Type | Method and Description |
|---|---|
<T> T |
Aggregator.aggregate(CyTable table,
CyGroup group,
CyColumn column)
Aggregate the column for the members of the specified group into
the group.
|
| Modifier and Type | Method and Description |
|---|---|
CyColumn |
CyTable.getColumn(String columnName)
Returns the column for the specified name.
|
CyColumn |
CyTable.getPrimaryKey()
Returns the column type of the primary key for this table.
|
| Modifier and Type | Method and Description |
|---|---|
Collection<CyColumn> |
CyTable.getColumns()
Returns the column types for all columns in this table.
|
| Modifier and Type | Field and Description |
|---|---|
protected CyColumn |
AbstractTableColumnTask.column
The
CyColumn that descendants will operate on. |
protected CyColumn |
AbstractTableCellTask.column
|
| Modifier and Type | Method and Description |
|---|---|
TaskIterator |
TableColumnTaskFactory.createTaskIterator(CyColumn column)
Used to provision this factory with a
CyColumn that will be used to create tasks. |
TaskIterator |
TableCellTaskFactory.createTaskIterator(CyColumn column,
Object primaryKeyValue)
Used to provision this factory with a
CyColumn and a primary key that will be
used to create tasks. |
boolean |
TableColumnTaskFactory.isReady(CyColumn column)
Returns true if this task factory is ready to produce a TaskIterator.
|
boolean |
AbstractTableColumnTaskFactory.isReady(CyColumn column)
Returns true if the supplied column is not null.
|
boolean |
TableCellTaskFactory.isReady(CyColumn column,
Object primaryKeyValue)
Returns true if this task factory is ready to produce a TaskIterator.
|
boolean |
AbstractTableCellTaskFactory.isReady(CyColumn column,
Object primaryKeyValue)
Returns true if the supplied column and value are not null.
|
| Constructor and Description |
|---|
AbstractTableCellTask(CyColumn column,
Object primaryKeyValue)
Initializes a Task that needs to operate on a CyTable cell entry.
|
AbstractTableColumnTask(CyColumn column)
Initializes a Task that needs to operate on a CyTable column.
|
| Modifier and Type | Method and Description |
|---|---|
TaskIterator |
RenameColumnTaskFactory.createTaskIterator(CyColumn column,
String newColumnName)
Create a task iterator for renaming a selected column.
|
TaskIterator |
JoinTablesTaskTaskFactory.createTaskIterator(CyTable globalTable,
boolean selectedNetworksOnly,
List<CyNetwork> networkList,
CyRootNetwork rootNetwork,
CyColumn targetJoinColumn,
Class<? extends CyIdentifiable> tableType) |
Copyright 2011 Cytoscape Consortium. All rights reserved.