org.cytoscape.view.layout

Class PartitionUtil

java.lang.Object

org.cytoscape.view.layout.PartitionUtil

public final class PartitionUtil
extends Object

This class also provides static methods that are used to partition a network.

Cytoscape Backwards Compatibility (Static Class): This class is static and therefore can't be extended by users. This means that we may add methods for minor version updates. Methods will only be removed for major version updates.

Method Summary

Methods

Modifier and Type	Method and Description
static List<LayoutPartition>	partition(CyNetworkView networkView, boolean selectedOnly, EdgeWeighter edgeWeighter) Partition the graph -- this builds the LayoutEdge and LayoutNode arrays as a byproduct.
static List<LayoutPartition>	partition(CyNetworkView networkView, Collection<CyNode> nodeSet, EdgeWeighter edgeWeighter) Partition the graph -- this builds the LayoutEdge and LayoutNode arrays as a byproduct.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

partition

public static List<LayoutPartition> partition(CyNetworkView networkView,
                              boolean selectedOnly,
                              EdgeWeighter edgeWeighter)

Partition the graph -- this builds the LayoutEdge and LayoutNode arrays as a byproduct. The algorithm for this was taken from algorithms/graphPartition/SGraphPartition.java.

Parameters:

networkView - the CyNetworkView representing the graph

selectedOnly - only consider selected nodes

edgeWeighter - the weighter to use for edge weighting

Returns:

a List of LayoutPartitions

partition

public static List<LayoutPartition> partition(CyNetworkView networkView,
                              Collection<CyNode> nodeSet,
                              EdgeWeighter edgeWeighter)

Partition the graph -- this builds the LayoutEdge and LayoutNode arrays as a byproduct. The algorithm for this was taken from algorithms/graphPartition/SGraphPartition.java.

Parameters:

networkView - the CyNetworkView representing the graph

nodeSet - the set of nodes to consider

edgeWeighter - the weighter to use for edge weighting

Returns:

a List of LayoutPartitions