Package | Description |
---|---|
org.cytoscape.group |
This package provides an API for creating and managing
groups in Cytoscape.
|
org.cytoscape.group.data |
An api for configuring
CyGroup s. |
org.cytoscape.group.events |
This package contains the various events and listeners
related to group management, creation, and destruction.
|
Modifier and Type | Method and Description |
---|---|
CyGroup |
CyGroupFactory.createGroup(CyNetwork network,
boolean register)
Creates a CyGroup object in the referenced network.
|
CyGroup |
CyGroupFactory.createGroup(CyNetwork network,
CyNode node,
boolean register)
Creates a CyGroup object in the referenced network from
an existing
CyNode . |
CyGroup |
CyGroupFactory.createGroup(CyNetwork network,
CyNode node,
List<CyNode> nodes,
List<CyEdge> edges,
boolean register)
Creates a CyGroup object in the referenced network from
an existing
CyNode . |
CyGroup |
CyGroupFactory.createGroup(CyNetwork network,
List<CyNode> nodes,
List<CyEdge> edges,
boolean register)
Creates a CyGroup object in the referenced network initially populated with
the supplied nodes.
|
CyGroup |
CyGroupManager.getGroup(CyNode node,
CyNetwork network)
Return the group the corresponds to a particular
node in a
CyNetwork . |
Modifier and Type | Method and Description |
---|---|
Set<CyGroup> |
CyGroupManager.getGroupSet(CyNetwork network)
Provides the set of all the groups known to the groups
manager in a particular network.
|
List<CyGroup> |
CyGroupManager.getGroupsForNode(CyNode node)
Return the list of
CyGroup s this node is in. |
List<CyGroup> |
CyGroupManager.getGroupsForNode(CyNode node,
CyNetwork network)
Return the list of
CyGroup s this node is in for
a particular network. |
Modifier and Type | Method and Description |
---|---|
void |
CyGroupManager.addGroup(CyGroup group)
Registers a group with the group manager.
|
void |
CyGroupManager.destroyGroup(CyGroup group)
Destroy a group.
|
Modifier and Type | Method and Description |
---|---|
void |
CyGroupManager.addGroups(List<CyGroup> groups)
Registers a list of groups with the group manager.
|
Modifier and Type | Method and Description |
---|---|
<T> T |
Aggregator.aggregate(CyTable table,
CyGroup group,
CyColumn column)
Aggregate the column for the members of the specified group into
the group.
|
Constructor and Description |
---|
GroupAboutToBeDestroyedEvent(CyGroupManager source,
CyGroup group)
Constructs event.
|
GroupAboutToBeRemovedEvent(CyGroup source,
CyNetwork network)
Constructs event.
|
GroupAboutToCollapseEvent(CyGroup source,
CyNetwork network,
boolean collapsing)
Constructs event.
|
GroupAddedEvent(CyGroupManager source,
CyGroup group)
Constructs event.
|
GroupAddedToNetworkEvent(CyGroup source,
CyNetwork network)
Constructs event.
|
GroupCollapsedEvent(CyGroup source,
CyNetwork network,
boolean collapsed)
Constructs event.
|
GroupEdgesAddedEvent(CyGroup source,
CyEdge edge)
Constructs event.
|
GroupEdgesAddedEvent(CyGroup source,
List<CyEdge> edges)
Constructs event.
|
GroupEdgesRemovedEvent(CyGroup source,
CyEdge edge)
Constructs event.
|
GroupEdgesRemovedEvent(CyGroup source,
List<CyEdge> edges)
Constructs event.
|
GroupNodesAddedEvent(CyGroup source,
CyNode node)
Constructs event.
|
GroupNodesAddedEvent(CyGroup source,
List<CyNode> nodes)
Constructs event.
|
GroupNodesRemovedEvent(CyGroup source,
CyNode node)
Constructs event.
|
GroupNodesRemovedEvent(CyGroup source,
List<CyNode> nodes)
Constructs event.
|
Copyright 2011 Cytoscape Consortium. All rights reserved.