public abstract class AbstractCyNetworkReader extends AbstractTask implements CyNetworkReader
Modifier and Type | Field and Description |
---|---|
protected CyNetworkFactory |
cyNetworkFactory
Will be used to create new CySubNetwork if this reader needs to create
new CyRootNetwork.
|
protected CyNetworkViewFactory |
cyNetworkViewFactory
Will be used for creating network views.
|
protected InputStream |
inputStream
Data stream for the networks to be created.
|
protected CyNetwork[] |
networks
Array of networks to be returned.
|
cancelled
Constructor and Description |
---|
AbstractCyNetworkReader(InputStream inputStream,
CyNetworkViewFactory cyNetworkViewFactory,
CyNetworkFactory cyNetworkFactory,
CyNetworkManager cyNetworkManager,
CyRootNetworkManager cyRootNetworkManager) |
Modifier and Type | Method and Description |
---|---|
CyNetwork[] |
getNetworks()
Returns an array of networks read after executing the run() method of
Task . |
protected Map<Object,CyNode> |
getNodeMap()
Returns map from key value to existing CyNode.
|
protected CyRootNetwork |
getRootNetwork()
Get target network collection, i.e., parent root network for all networks
to be loaded.
|
ListSingleSelection<String> |
getRootNetworkList() |
ListSingleSelection<String> |
getSourceColumnList() |
ListSingleSelection<String> |
getTargetColumnList() |
String |
getTitle() |
void |
setRootNetworkList(ListSingleSelection<String> roots) |
void |
setSourceColumnList(ListSingleSelection<String> colList) |
void |
setTargetColumnList(ListSingleSelection<String> colList) |
cancel, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, run, setTaskIterator
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
buildCyNetworkView
protected InputStream inputStream
protected CyNetwork[] networks
protected final CyNetworkViewFactory cyNetworkViewFactory
protected final CyNetworkFactory cyNetworkFactory
public AbstractCyNetworkReader(InputStream inputStream, CyNetworkViewFactory cyNetworkViewFactory, CyNetworkFactory cyNetworkFactory, CyNetworkManager cyNetworkManager, CyRootNetworkManager cyRootNetworkManager)
inputStream
- cyNetworkViewFactory
- cyNetworkFactory
- cyNetworkManager
- cyRootNetworkManager
- cyApplicationManager
- public String getTitle()
public ListSingleSelection<String> getSourceColumnList()
public void setSourceColumnList(ListSingleSelection<String> colList)
public ListSingleSelection<String> getTargetColumnList()
public void setTargetColumnList(ListSingleSelection<String> colList)
public ListSingleSelection<String> getRootNetworkList()
public void setRootNetworkList(ListSingleSelection<String> roots)
public CyNetwork[] getNetworks()
CyNetworkReader
Task
.getNetworks
in interface CyNetworkReader
Task
.protected final CyRootNetwork getRootNetwork()
Copyright 2011 Cytoscape Consortium. All rights reserved.