Package | Description |
---|---|
org.cytoscape.io |
Handle import/export of Cytoscape data structures to/from local files/remote URLs.
|
org.cytoscape.io.read |
Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
|
org.cytoscape.io.write |
This package provides factory interfaces to be used by anyone wishing to provide
export or writing capabilities to the rest of Cytoscape.
|
Modifier and Type | Class and Description |
---|---|
class |
BasicCyFileFilter
This is meant to be an basic implementation of
CyFileFilter that can
either be used directly or extended to provide different acceptance criteria. |
Modifier and Type | Method and Description |
---|---|
CyFileFilter |
CyFileFilterProvider.getFileFilter()
Return the file filter associated with the IOFactory.
|
Modifier and Type | Method and Description |
---|---|
CyFileFilter |
AbstractInputStreamTaskFactory.getFileFilter()
Return the file filter associated with the IOFactory.
|
Constructor and Description |
---|
AbstractInputStreamTaskFactory(CyFileFilter fileFilter) |
Modifier and Type | Method and Description |
---|---|
List<CyFileFilter> |
CyWriterManager.getAvailableWriterFilters()
Returns a list of the available
CyFileFilter s that define the available
output types. |
List<CyFileFilter> |
CyPropertyWriterManager.getAvailableWriterFilters()
Returns the
CyFileFilter s known to this CyWriter manager. |
Modifier and Type | Method and Description |
---|---|
W |
CyWriterManager.getMatchingFactory(CyFileFilter filter)
Returns a
CyWriterFactory for the appropriate filter. |
CyWriter |
CyNetworkViewWriterManager.getWriter(CyNetwork network,
CyFileFilter filter,
File file)
Returns the
CyWriter Task that will attempt to write the specified network to the
specified file of the specified file type. |
CyWriter |
CyNetworkViewWriterManager.getWriter(CyNetwork network,
CyFileFilter filter,
OutputStream os)
Returns the
CyWriter Task that will attempt to write the specified network to the
specified output steam of the specified file type. |
CyWriter |
CyNetworkViewWriterManager.getWriter(CyNetworkView view,
CyFileFilter filter,
File file)
Returns the
CyWriter Task that will attempt to write the specified view to the
specified file of the specified file type. |
CyWriter |
CyNetworkViewWriterManager.getWriter(CyNetworkView view,
CyFileFilter filter,
OutputStream os)
Returns the
CyWriter Task that will attempt to write the specified view to the
specified output steam of the specified file type. |
CyWriter |
CySessionWriterManager.getWriter(CySession session,
CyFileFilter filter,
File file)
Returns the
CyWriter Task that will attempt to write the specified session to the
specified file of the specified file type. |
CyWriter |
CySessionWriterManager.getWriter(CySession session,
CyFileFilter filter,
OutputStream os)
Returns the
CyWriter Task that will attempt to write the specified session to the
specified output stream of the specified file type. |
CyWriter |
CyTableWriterManager.getWriter(CyTable table,
CyFileFilter filter,
File file)
Returns the
CyWriter Task that will attempt to write the specified table to the
specified file of the specified file type. |
CyWriter |
CyTableWriterManager.getWriter(CyTable table,
CyFileFilter filter,
OutputStream os)
Returns the
CyWriter Task that will attempt to write the specified table to the
specified output stream of the specified file type. |
CyWriter |
CyPropertyWriterManager.getWriter(Object property,
CyFileFilter filter,
File file)
Returns the
CyWriter Task that will attempt to write the specified property
object to the specified file of the specified file type. |
CyWriter |
CyPropertyWriterManager.getWriter(Object property,
CyFileFilter filter,
OutputStream os)
Returns the
CyWriter Task that will attempt to write the specified property
object to the specified output stream of the specified file type. |
CyWriter |
VizmapWriterManager.getWriter(Set<VisualStyle> styles,
CyFileFilter filter,
File file)
Returns the
CyWriter Task that will attempt to write the specified vizmap to the
specified file of the specified file type. |
CyWriter |
VizmapWriterManager.getWriter(Set<VisualStyle> styles,
CyFileFilter filter,
OutputStream os)
Returns the
CyWriter Task that will attempt to write the specified vizmap to the
specified output stream of the specified file type. |
CyWriter |
PresentationWriterManager.getWriter(View<?> view,
RenderingEngine<?> re,
CyFileFilter filter,
File file)
Returns the
CyWriter Task that will attempt to write the specified view to the
specified file of the specified file type. |
CyWriter |
PresentationWriterManager.getWriter(View<?> view,
RenderingEngine<?> re,
CyFileFilter filter,
OutputStream os)
Returns the
CyWriter Task that will attempt to write the specified view to the
specified output stream of the specified file type. |
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