| Package | Description |
|---|---|
| org.cytoscape.app |
This is the Cytoscape App API, which supports development of Cytoscape 3.X
apps in a manner similar to apps developed in Cytoscape 2.X.
|
| org.cytoscape.io.read |
Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
|
| org.cytoscape.task.edit |
This package include a set of task factory interfaces that allow
the modification or editing of various objects within Cytoscape.
|
| Class and Description |
|---|
| CyNetworkReaderManager
An object that registers all InputStreamReaderFactory singletons,
processes specified input to determine the appropriate factory to
use and then returns an instance of the correct
CyNetworkReader
for the input. |
| CyPropertyReaderManager
An object that registers all InputStreamReaderFactory singletons,
processes specified input to determine the appropriate factory to
use and then returns an instance of the correct
CyPropertyReader
for the input. |
| CySessionReaderManager
An object that registers all InputStreamReaderFactory singletons,
processes specified input to determine the appropriate factory to
use and then returns an instance of the correct
CySessionReader
for the input. |
| CyTableReaderManager
An object that registers all InputStreamReaderFactory singletons,
processes specified input to determine the appropriate factory to
use and then returns an instance of the correct
CyTableReader
for the input. |
| Class and Description |
|---|
| CyNetworkReader
An extension of the Task interface that returns an array of
CyNetwork objects that are read as part
of the Task. |
| CyPropertyReader
An extension of the Task interface that returns a property
object.
|
| CySessionReader
An extension of the Task interface that returns a
org.cytoscape.property.session.Cysession object. |
| CyTableReader
An extension of the Task interface that returns an array of
CyTable objects. |
| InputStreamTaskFactory
A super interface that allows the input stream to be set for reader
task factories.
|
| VizmapReader
An extension of the Task interface that returns a
VisualStyle object. |
| Class and Description |
|---|
| CyTableReader
An extension of the Task interface that returns an array of
CyTable objects. |
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