| Package | Description |
|---|---|
| org.cytoscape.app |
This is the Cytoscape App API, which supports development of Cytoscape 3.X
apps in a manner similar to apps developed in Cytoscape 2.X.
|
| org.cytoscape.application |
This package provides Cytoscape version number, application-wide setting,
basic access to current network, selected networks, views and rendering engines.
|
| org.cytoscape.application.events |
This package provides application events/listeners, including
Cytoscape startup/shutdown, setCurrentNetwork/setCurrentNetworkView/
setSelectedNetwork.
|
| org.cytoscape.application.swing |
This package defines the various interfaces, abstract classes, and enums
that represent the Cytoscape Swing Application API.
|
| org.cytoscape.io.read |
Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
|
| org.cytoscape.io.write |
This package provides factory interfaces to be used by anyone wishing to provide
export or writing capabilities to the rest of Cytoscape.
|
| org.cytoscape.jobs |
This package provides a mechanism for executing remote jobs from within Cytoscape.
|
| org.cytoscape.session |
This package contains the interfaces and classes necessary to capturing,
storing, and retrieving the state of a Cytoscape session.
|
| org.cytoscape.task |
This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
|
| org.cytoscape.task.create |
This package provides a variety of task factory interfaces for creating
new instances of network and other objects.
|
| org.cytoscape.task.write |
This package contains a set of task factory interfaces used for
exporting or writing a variety of Cytoscape objects to files.
|
| org.cytoscape.view.layout |
This package provides access to the available layout algorithms, as well as provides abstract layout
classes and layout information containers for the convenience of implementing other layout algorithms.
|
| org.cytoscape.view.model |
Module for View Models and Visual Properties.
|
| org.cytoscape.view.model.events |
Definitions for View-Model related events and their listeners.
|
| org.cytoscape.view.presentation |
API set for rendering engines (visualizers).
|
| org.cytoscape.view.presentation.annotations |
This package provides support for graphical annotations associated with a Cytoscape
CyNetworkView. |
| org.cytoscape.view.presentation.customgraphics |
This package provides an API for augmenting a
RenderingEngines
node rendering with custom graphics. |
| org.cytoscape.view.presentation.property |
Implementations of basic VisualProperty objects and VisualLexicons.
|
| org.cytoscape.view.presentation.property.values |
Interfaces for VisualPropertyValues -- ArrowShape, LineType and NodeShape
|
| org.cytoscape.view.vizmap |
Visual Mapping basic API module.
|
| org.cytoscape.view.vizmap.events |
Events for Visual Mappings.
|
| org.cytoscape.view.vizmap.gui.editor |
Provides editors for Visual Properties and editor managers for VizMap GUI.
|
| org.cytoscape.view.vizmap.gui.event |
Provides events and listeners of LexiconState, visual style switch and vizMap event, as well as VizMap event handler manager.
|
| org.cytoscape.view.vizmap.gui.util |
Create discrete mapping for a given set of attribute values
|
| org.cytoscape.view.vizmap.mappings |
APIs for different mapping functions -- continuous mapping, discrete mapping and pass through mapping.
|
| Class and Description |
|---|
| CyNetworkViewFactory
Factory for
CyNetworkView objects. |
| CyNetworkViewManager
Basic access to network views in an instance of Cytoscape.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| CyNetworkViewFactory
Factory for
CyNetworkView objects. |
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| CyNetworkViewManager
Basic access to network views in an instance of Cytoscape.
|
| View
The base interface that defines methods used to set visual properties
for nodes, edges, and networks.
|
| VisualProperty
An object which represents a type of visual entity, such as node color, size, etc.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| CyNetworkViewFactory
Factory for
CyNetworkView objects. |
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| View
The base interface that defines methods used to set visual properties
for nodes, edges, and networks.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| VisualProperty
An object which represents a type of visual entity, such as node color, size, etc.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| View
The base interface that defines methods used to set visual properties
for nodes, edges, and networks.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| CyNetworkViewFactory
Factory for
CyNetworkView objects. |
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| View
The base interface that defines methods used to set visual properties
for nodes, edges, and networks.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| NullDataType
An empty/null data type marker interface for Visual Properties holding no actual data.
|
| Range
Defines a range of values for
VisualPropertys. |
| View
The base interface that defines methods used to set visual properties
for nodes, edges, and networks.
|
| VisualLexiconNode
A node in the visual property tree (lexicon).
|
| VisualProperty
An object which represents a type of visual entity, such as node color, size, etc.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| CyNetworkViewManager
Basic access to network views in an instance of Cytoscape.
|
| View
The base interface that defines methods used to set visual properties
for nodes, edges, and networks.
|
| VisualProperty
An object which represents a type of visual entity, such as node color, size, etc.
|
| Class and Description |
|---|
| View
The base interface that defines methods used to set visual properties
for nodes, edges, and networks.
|
| VisualLexicon
A RenderingEngine should provide one, immutable lexicon implementing this interface.
|
| VisualProperty
An object which represents a type of visual entity, such as node color, size, etc.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| View
The base interface that defines methods used to set visual properties
for nodes, edges, and networks.
|
| Class and Description |
|---|
| AbstractVisualProperty
An abstract implementation of VisualProperty that omits the methods dealing
with serializing data.
|
| NullDataType
An empty/null data type marker interface for Visual Properties holding no actual data.
|
| Range
Defines a range of values for
VisualPropertys. |
| Visualizable
Marker interface for data types used by higher-level Visual Properties such as NODE, EDGE, or NETWORK.
|
| VisualLexicon
A RenderingEngine should provide one, immutable lexicon implementing this interface.
|
| VisualLexiconNode
A node in the visual property tree (lexicon).
|
| VisualProperty
An object which represents a type of visual entity, such as node color, size, etc.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| View
The base interface that defines methods used to set visual properties
for nodes, edges, and networks.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| View
The base interface that defines methods used to set visual properties
for nodes, edges, and networks.
|
| VisualLexicon
A RenderingEngine should provide one, immutable lexicon implementing this interface.
|
| VisualProperty
An object which represents a type of visual entity, such as node color, size, etc.
|
| Class and Description |
|---|
| CyNetworkView
Additional methods for CyNetworkView.
|
| Class and Description |
|---|
| VisualProperty
An object which represents a type of visual entity, such as node color, size, etc.
|
| Class and Description |
|---|
| VisualProperty
An object which represents a type of visual entity, such as node color, size, etc.
|
| Class and Description |
|---|
| VisualProperty
An object which represents a type of visual entity, such as node color, size, etc.
|
| Class and Description |
|---|
| View
The base interface that defines methods used to set visual properties
for nodes, edges, and networks.
|
| VisualProperty
An object which represents a type of visual entity, such as node color, size, etc.
|
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