Package | Description |
---|---|
org.cytoscape.io.read |
Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
|
org.cytoscape.task |
This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
|
org.cytoscape.view.layout |
This package provides access to the available layout algorithms, as well as provides abstract layout
classes and layout information containers for the convenience of implementing other layout algorithms.
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractCyNetworkReader |
Modifier and Type | Class and Description |
---|---|
class |
AbstractEdgeViewTask
The base class for all tasks that need to operate on an edge view and possibly its associated network view.
|
class |
AbstractNetworkCollectionTask
The base class for all tasks that need to operate on a Collection of
CyNetwork s. |
class |
AbstractNetworkTask
Base class for all tasks that need to operate on a
CyNetwork . |
class |
AbstractNetworkViewCollectionTask
The base class for all tasks that need to operate on a Collection of
CyNetworkView s. |
class |
AbstractNetworkViewTask
The base class for all tasks that need to operate on a network view.
|
class |
AbstractNodeViewTask
The base class for all tasks that need to operate on a node view and possibly its associated network view.
|
class |
AbstractRowTask
Base class for all tasks that need to operate on a
CyRow . |
class |
AbstractTableCellTask
A base class for Tasks that need to operate on a single CyTable cell.
|
class |
AbstractTableColumnTask
A base class for Tasks that need to operate on an entire CyTable column.
|
class |
AbstractTableTask
A base class for Tasks that need to operate on an entire
CyTable . |
Modifier and Type | Class and Description |
---|---|
class |
AbstractLayoutTask
This is a basic implementation of a LayoutAlgorithm Task that does some
bookkeeping, but primarily delegates to the doLayout() method.
|
class |
AbstractParallelPartitionLayoutTask
This is an even more helpful implementation of a LayoutAlgorithm Task
that extends AbstractPartitionLayoutTask and does the work of partitioning
the CyNetworkView so that partitions may be laid out individually.
|
class |
AbstractPartitionLayoutTask
This is a more helpful implementation of a LayoutAlgorithm Task
that extends AbstractBasicLayoutTask and does the work of partitioning
the CyNetworkView so that partitions may be laid out individually.
|
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