| Package | Description |
|---|---|
| org.cytoscape.command |
Interface to support execution of tasks as commands, including
the ability to get a list of namespaces, commands, and arguments,
and then execute those commands with a set of arguments.
|
| org.cytoscape.io.read |
Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
|
| org.cytoscape.view.layout |
This package provides access to the available layout algorithms, as well as provides abstract layout
classes and layout information containers for the convenience of implementing other layout algorithms.
|
| org.cytoscape.work |
This package defines the task framework, where tasks are units of work.
|
| org.cytoscape.work.swing |
This packages provides Swing-specific specialisations of concepts from work-api
This includes
TaskFactory, TaskManager,
and TaskIterator. |
| Constructor and Description |
|---|
AbstractStringTunableHandler(Field f,
Object o,
Tunable t) |
AbstractStringTunableHandler(Method get,
Method set,
Object o,
Tunable t) |
| Modifier and Type | Method and Description |
|---|---|
ListSingleSelection<NetworkViewRenderer> |
AbstractCyNetworkReader.getNetworkViewRendererList() |
ListSingleSelection<String> |
AbstractCyNetworkReader.getRootNetworkList() |
ListSingleSelection<String> |
AbstractCyNetworkReader.getTargetColumnList() |
| Modifier and Type | Field and Description |
|---|---|
double |
EdgeWeighter.defaultEdgeWeight |
double |
EdgeWeighter.maxWeightCutoff |
double |
EdgeWeighter.minWeightCutoff |
| Modifier and Type | Method and Description |
|---|---|
ListSingleSelection<WeightTypes> |
EdgeWeighter.getType() |
| Modifier and Type | Method and Description |
|---|---|
T |
TunableHandlerFactory.createTunableHandler(Field field,
Object instance,
Tunable tunable)
This method returns a
TunableHandler for a field annotated as a Tunable
if this factory can produce an appropriate handler for this type of field. |
T |
BasicTunableHandlerFactory.createTunableHandler(Field field,
Object instance,
Tunable tunable) |
T |
TunableHandlerFactory.createTunableHandler(Method getter,
Method setter,
Object instance,
Tunable tunable)
This method returns a
TunableHandler for a method annotated as a Tunable
if this factory can produce an appropriate handler for this type of method. |
T |
BasicTunableHandlerFactory.createTunableHandler(Method getter,
Method setter,
Object instance,
Tunable tunable) |
| Constructor and Description |
|---|
AbstractTunableHandler(Field field,
Object instance,
Tunable tunable)
Standard base class constructor for
TunableHandlers that deal with
Tunables that annotate a field. |
AbstractTunableHandler(Method getter,
Method setter,
Object instance,
Tunable tunable)
Standard base class constructor for
TunableHandlers that deal with
Tunables that use getter and setter methods. |
| Constructor and Description |
|---|
AbstractGUITunableHandler(Field field,
Object instance,
Tunable tunable)
Standard base class constructor for
TunableHandlers that deal with
Tunables that annotate a control. |
AbstractGUITunableHandler(Method getter,
Method setter,
Object instance,
Tunable tunable)
Standard base class constructor for
TunableHandlers that deal with
Tunables that use getter and setter methods. |
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