Hierarchy For All Packages

Package Hierarchies:

cytoscape, cytoscape.actions, cytoscape.command, cytoscape.data, cytoscape.data.annotation, cytoscape.data.annotation.readers, cytoscape.data.attr, cytoscape.data.attr.util, cytoscape.data.ontology, cytoscape.data.ontology.readers, cytoscape.data.readers, cytoscape.data.servers, cytoscape.data.synonyms, cytoscape.data.synonyms.readers, cytoscape.data.webservice, cytoscape.data.webservice.ui, cytoscape.data.webservice.util, cytoscape.data.writers, cytoscape.dialogs, cytoscape.dialogs.logger, cytoscape.dialogs.plugins, cytoscape.dialogs.preferences, cytoscape.ding, cytoscape.giny, cytoscape.groups, cytoscape.init, cytoscape.layout, cytoscape.layout.algorithms, cytoscape.layout.ui, cytoscape.logger, cytoscape.plugin, cytoscape.util, cytoscape.util.export, cytoscape.util.shadegrown, cytoscape.util.swing, cytoscape.util.undo, cytoscape.view, cytoscape.view.cytopanels, cytoscape.visual, cytoscape.visual.calculators, cytoscape.visual.converter, cytoscape.visual.customgraphic, cytoscape.visual.customgraphic.impl, cytoscape.visual.customgraphic.impl.bitmap, cytoscape.visual.customgraphic.impl.vector, cytoscape.visual.customgraphic.paint, cytoscape.visual.customgraphic.ui, cytoscape.visual.mappings, cytoscape.visual.mappings.continuous, cytoscape.visual.mappings.discrete, cytoscape.visual.mappings.rangecalculators, cytoscape.visual.parsers, cytoscape.visual.properties, cytoscape.visual.strokes, cytoscape.visual.ui, cytoscape.visual.ui.editors.continuous, cytoscape.visual.ui.editors.discrete, cytoscape.visual.ui.icon

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • cytoscape.actions.AlignHorizontalAction
    • cytoscape.actions.AlignVerticalAction
    • cytoscape.actions.AnimatedLayoutAction
    • cytoscape.util.CytoscapeAction (implements javax.swing.event.MenuListener)
      • cytoscape.actions.AlphabeticalSelectionAction (implements java.awt.event.ActionListener)
      • cytoscape.actions.ApplyVisualStyleAction
      • cytoscape.actions.BackgroundColorAction
      • cytoscape.actions.BendSelectedEdgesAction
      • cytoscape.actions.BirdsEyeViewAction (implements java.beans.PropertyChangeListener)
      • cytoscape.actions.BookmarkAction
      • cytoscape.actions.CloneGraphInNewWindowAction
      • cytoscape.actions.CreateNetworkViewAction
      • cytoscape.actions.CytoPanelAction
      • cytoscape.actions.DeleteAction
      • cytoscape.actions.DeselectAllAction
      • cytoscape.actions.DeSelectAllEdgesAction
      • cytoscape.actions.DeSelectAllNodesAction
      • cytoscape.actions.DestroyNetworkAction
      • cytoscape.actions.DestroyNetworkViewAction
      • cytoscape.actions.ExitAction
      • cytoscape.actions.ExportAction
      • cytoscape.actions.ExportAsGMLAction
      • cytoscape.actions.ExportAsGraphicsAction
      • cytoscape.actions.ExportAsInteractionsAction
      • cytoscape.actions.ExportAsXGMMLAction
      • cytoscape.actions.ExportEdgeAttributesAction
      • cytoscape.actions.ExportNodeAttributesAction
      • cytoscape.actions.ExportVizmapAction
      • cytoscape.actions.FitContentAction
      • cytoscape.actions.GraphObjectSelectionAction
      • cytoscape.actions.HelpAboutAction
      • cytoscape.actions.HelpContactHelpDeskAction
      • cytoscape.actions.HelpContentsAction
      • cytoscape.actions.HideSelectedAction
      • cytoscape.actions.HideSelectedEdgesAction
      • cytoscape.actions.HideSelectedNodesAction
      • cytoscape.actions.ImportEdgeAttributesAction
      • cytoscape.actions.ImportExpressionMatrixAction
      • cytoscape.actions.ImportGraphFileAction
      • cytoscape.actions.ImportNodeAttributesAction
      • cytoscape.actions.ImportVizmapAction
      • cytoscape.actions.InvertSelectedEdgesAction
      • cytoscape.actions.InvertSelectedNodesAction
      • cytoscape.actions.ListFromFileSelectionAction
      • cytoscape.actions.LoggerAction
      • cytoscape.actions.MemoryUsageAction
      • cytoscape.actions.NewNetworkAction
      • cytoscape.actions.NewSessionAction
      • cytoscape.actions.NewWindowSelectedNodesEdgesAction
      • cytoscape.actions.NewWindowSelectedNodesOnlyAction
      • cytoscape.actions.OpenSessionAction
      • cytoscape.actions.PluginManagerAction
      • cytoscape.actions.PluginUpdateAction
      • cytoscape.actions.PreferenceAction
      • cytoscape.actions.PrintAction
      • cytoscape.actions.ProxyServerAction
      • cytoscape.util.undo.RedoAction
      • cytoscape.actions.SaveSessionAction
      • cytoscape.actions.SaveSessionAsAction
      • cytoscape.actions.SelectAdjacentEdgesAction
      • cytoscape.actions.SelectAllAction
      • cytoscape.actions.SelectAllEdgesAction
      • cytoscape.actions.SelectAllNodesAction
      • cytoscape.actions.SelectConnectedNodesAction
      • cytoscape.actions.SelectFirstNeighborsAction
      • cytoscape.layout.ui.SettingsAction
      • cytoscape.actions.SetVisualPropertiesAction
      • cytoscape.actions.ShowAllAction
      • cytoscape.actions.ShowCustomGraphicsManagerAction
      • cytoscape.actions.ShowGraphicsDetailsAction
      • cytoscape.dialogs.ShrinkExpandGraph
      • cytoscape.actions.StraightenSelectedEdgesAction
      • cytoscape.actions.ToggleVisualMapperAction
      • cytoscape.util.undo.UndoAction
      • cytoscape.actions.UnHideSelectedEdgesAction
      • cytoscape.actions.UnHideSelectedNodesAction
      • cytoscape.actions.WebServiceNetworkImportAction
      • cytoscape.actions.ZoomAction
      • cytoscape.actions.ZoomSelectedAction
    • cytoscape.actions.EdgeManipulationAction
    • cytoscape.dialogs.ExpressionDataPopupTable.OKAction
    • cytoscape.dialogs.GinyEdgeControlDialog.OKAction
    • cytoscape.dialogs.IconPopupButton.ApplyIconAction
    • cytoscape.dialogs.IconPopupButton.CancelIconAction
    • cytoscape.dialogs.LabelTextPanel.BoxAction
    • cytoscape.dialogs.NewStringPopupDialog.CancelAction
    • cytoscape.dialogs.NewStringPopupDialog.OkAction
    • cytoscape.visual.ui.PopupIconChooser.ApplyIconAction
    • cytoscape.visual.ui.PopupIconChooser.CancelIconAction
    • cytoscape.dialogs.PopupTextArea.OKAction
    • cytoscape.actions.RotateSelectedNodesAction
    • cytoscape.actions.UnHideSelectedAction
  • cytoscape.visual.calculators.AbstractCalculator (implements cytoscape.visual.calculators.Calculator)
    • cytoscape.visual.calculators.BasicCalculator
      • cytoscape.visual.calculators.GenericNodeCustomGraphicCalculator
  • cytoscape.util.swing.AbstractCellEditor (implements javax.swing.CellEditor)
    • cytoscape.util.swing.JTreeTable.TreeTableCellEditor (implements javax.swing.table.TableCellEditor)
  • org.biojava.utils.AbstractChangeable (implements org.biojava.utils.Changeable)
    • cytoscape.data.ontology.Ontology (implements org.biojava.ontology.Ontology)
      • cytoscape.data.ontology.GeneOntology
    • cytoscape.data.ontology.OntologyTerm (implements org.biojava.ontology.OntologyTerm)
      • cytoscape.data.ontology.GOTerm
    • cytoscape.data.ontology.Triple (implements org.biojava.ontology.Triple)
  • cytoscape.command.AbstractCommandHandler (implements cytoscape.command.CyCommandHandler)
  • cytoscape.visual.customgraphic.impl.AbstractDCustomGraphics (implements cytoscape.visual.customgraphic.CyCustomGraphics, cytoscape.visual.customgraphic.Taggable)
    • cytoscape.visual.customgraphic.impl.vector.GradientLayerCustomGraphics (implements cytoscape.visual.customgraphic.impl.vector.VectorCustomGraphics)
      • cytoscape.visual.customgraphic.impl.vector.GradientOvalLayer
      • cytoscape.visual.customgraphic.impl.vector.GradientRoundRectangleLayer
    • cytoscape.visual.customgraphic.NullCustomGraphics
    • cytoscape.visual.customgraphic.impl.bitmap.URLImageCustomGraphics
  • cytoscape.data.readers.AbstractGraphReader (implements cytoscape.data.readers.GraphReader)
    • cytoscape.data.readers.GMLReader
    • cytoscape.data.readers.InteractionsReader
    • cytoscape.data.readers.NNFReader (implements cytoscape.data.readers.NestedNetworkReader)
    • cytoscape.data.readers.XGMMLReader
  • cytoscape.layout.AbstractLayout (implements cytoscape.layout.CyLayoutAlgorithm)
    • cytoscape.layout.algorithms.GridNodeLayout
  • javax.swing.AbstractListModel (implements javax.swing.ListModel, java.io.Serializable)
    • javax.swing.DefaultComboBoxModel (implements javax.swing.MutableComboBoxModel, java.io.Serializable)
      • cytoscape.util.swing.WidestStringComboBoxModel (implements cytoscape.util.swing.WidestStringProvider)
  • org.jdesktop.swingx.treetable.AbstractMutableTreeTableNode (implements org.jdesktop.swingx.treetable.MutableTreeTableNode)
    • org.jdesktop.swingx.treetable.DefaultMutableTreeTableNode
      • cytoscape.visual.customgraphic.ui.CyCustomGraphicsTreeNode
  • com.l2fprod.common.propertysheet.AbstractProperty (implements com.l2fprod.common.propertysheet.Property)
    • com.l2fprod.common.propertysheet.DefaultProperty
      • cytoscape.visual.ui.VizMapperProperty
  • com.l2fprod.common.beans.editor.AbstractPropertyEditor (implements java.beans.PropertyEditor)
    • com.l2fprod.common.beans.editor.ColorPropertyEditor
      • cytoscape.visual.ui.editors.discrete.CyColorPropertyEditor.AsInt
    • cytoscape.visual.ui.editors.discrete.CyColorPropertyEditor
    • cytoscape.visual.ui.editors.discrete.CyComboBoxPropertyEditor
    • cytoscape.visual.ui.editors.discrete.CyCustomGraphicsEditor
    • cytoscape.visual.ui.editors.discrete.CyObjectPositionPropertyEditor
    • com.l2fprod.common.beans.editor.FontPropertyEditor
      • cytoscape.visual.ui.editors.discrete.CyFontPropertyEditor
    • com.l2fprod.common.beans.editor.NumberPropertyEditor
      • com.l2fprod.common.beans.editor.DoublePropertyEditor
        • cytoscape.visual.ui.editors.discrete.CyDoublePropertyEditor
    • com.l2fprod.common.beans.editor.StringPropertyEditor
      • cytoscape.visual.ui.editors.discrete.CyStringPropertyEditor
  • cytoscape.util.AbstractScaler (implements cytoscape.util.Scaler)
  • javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • javax.swing.table.DefaultTableModel (implements java.io.Serializable)
      • cytoscape.dialogs.NetworkMetaDataTableModel
    • cytoscape.dialogs.preferences.PluginsTableModel
    • cytoscape.dialogs.preferences.PreferenceTableModel
    • cytoscape.util.swing.TreeTableModelAdapter
  • cytoscape.util.swing.AbstractTreeTableModel (implements cytoscape.util.swing.TreeTableModel)
    • cytoscape.view.NetworkTreeTableModel
  • javax.swing.undo.AbstractUndoableEdit (implements java.io.Serializable, javax.swing.undo.UndoableEdit)
    • cytoscape.util.undo.CyAbstractEdit
  • cytoscape.visual.properties.AbstractVisualProperty (implements cytoscape.visual.VisualProperty)
    • cytoscape.visual.properties.EdgeColorProp
    • cytoscape.visual.properties.EdgeFontFaceProp
    • cytoscape.visual.properties.EdgeFontSizeProp
    • cytoscape.visual.properties.EdgeLabelColorProp
    • cytoscape.visual.properties.EdgeLabelOpacityProp
    • cytoscape.visual.properties.EdgeLabelPositionProp
    • cytoscape.visual.properties.EdgeLabelProp
    • cytoscape.visual.properties.EdgeLabelWidthProp
    • cytoscape.visual.properties.EdgeLineStyleProp
    • cytoscape.visual.properties.EdgeLineWidthProp
    • cytoscape.visual.properties.EdgeOpacityProp
    • cytoscape.visual.properties.EdgeSourceArrowColorProp
    • cytoscape.visual.properties.EdgeSourceArrowOpacityProp
    • cytoscape.visual.properties.EdgeSourceArrowShapeProp
    • cytoscape.visual.properties.EdgeTargetArrowColorProp
    • cytoscape.visual.properties.EdgeTargetArrowOpacityProp
    • cytoscape.visual.properties.EdgeTargetArrowShapeProp
    • cytoscape.visual.properties.EdgeToolTipProp
    • cytoscape.visual.properties.NodeBorderColorProp
    • cytoscape.visual.properties.NodeBorderOpacityProp
    • cytoscape.visual.properties.NodeCustomGraphicsPositionProp
    • cytoscape.visual.properties.NodeCustomGraphicsProp
    • cytoscape.visual.properties.NodeFillColorProp
    • cytoscape.visual.properties.NodeFontFaceProp
    • cytoscape.visual.properties.NodeFontSizeProp
    • cytoscape.visual.properties.NodeHeightProp
    • cytoscape.visual.properties.NodeLabelColorProp
    • cytoscape.visual.properties.NodeLabelOpacityProp
    • cytoscape.visual.properties.NodeLabelPositionProp
    • cytoscape.visual.properties.NodeLabelProp
    • cytoscape.visual.properties.NodeLabelWidthProp
    • cytoscape.visual.properties.NodeLineStyleProp
    • cytoscape.visual.properties.NodeLineWidthProp
    • cytoscape.visual.properties.NodeOpacityProp
    • cytoscape.visual.properties.NodeShapeProp
    • cytoscape.visual.properties.NodeShowNestedNetworkProp
    • cytoscape.visual.properties.NodeSizeProp
    • cytoscape.visual.properties.NodeToolTipProp
    • cytoscape.visual.properties.NodeWidthProp
  • cytoscape.data.synonyms.Aliases
  • cytoscape.data.annotation.Annotation (implements java.io.Serializable)
  • cytoscape.data.annotation.AnnotationDescription (implements java.io.Serializable)
  • cytoscape.data.annotation.readers.AnnotationFlatFileReader
  • cytoscape.data.annotation.readers.AnnotationXmlReader
  • cytoscape.visual.Appearance
    • cytoscape.visual.EdgeAppearance
    • cytoscape.visual.NodeAppearance
  • cytoscape.visual.Arrow (implements java.io.Serializable)
  • cytoscape.visual.parsers.ArrowParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.visual.parsers.ArrowShapeParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.data.AttribTopoGraphNode (implements cytoscape.util.TopoGraphNode)
  • cytoscape.data.webservice.AttributeImportQuery
  • cytoscape.view.BasicGraphViewHandler (implements cytoscape.view.GraphViewHandler)
  • java.awt.BasicStroke (implements java.awt.Stroke)
    • cytoscape.visual.strokes.DashDotStroke (implements cytoscape.visual.strokes.WidthStroke)
    • cytoscape.visual.strokes.EqualDashStroke (implements cytoscape.visual.strokes.WidthStroke)
    • cytoscape.visual.strokes.LongDashStroke (implements cytoscape.visual.strokes.WidthStroke)
    • cytoscape.visual.strokes.SolidStroke (implements cytoscape.visual.strokes.WidthStroke)
    • cytoscape.visual.strokes.ZeroStroke (implements cytoscape.visual.strokes.WidthStroke)
  • cytoscape.data.servers.BioDataServer
  • cytoscape.util.BioDataServerUtil
  • cytoscape.util.export.BitmapExporter (implements cytoscape.util.export.Exporter)
  • cytoscape.data.readers.BookmarkReader
  • cytoscape.util.BookmarksUtil
  • cytoscape.visual.parsers.BooleanParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.visual.mappings.BoundaryRangeValues
  • cytoscape.visual.CalculatorCatalog
  • cytoscape.visual.CalculatorCatalogFactory
  • cytoscape.visual.calculators.CalculatorFactory
  • cytoscape.visual.CalculatorIO
  • cytoscape.visual.ui.CellEditorFactory
  • cytoscape.visual.ui.CellHeightManager
  • cytoscape.visual.ui.CellRendererFactory
  • cytoscape.data.servers.clear
  • cytoscape.visual.converter.ColorConverter (implements cytoscape.visual.converter.ValueToStringConverter)
  • cytoscape.visual.customgraphic.paint.ColorPaintFactory (implements cytoscape.render.stateful.PaintFactory)
  • cytoscape.visual.parsers.ColorParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.visual.mappings.rangecalculators.ColorRangeValueCalculator (implements cytoscape.visual.mappings.RangeValueCalculator<T>)
  • cytoscape.util.ColorUtil
  • cytoscape.util.swing.ColumnResizer
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          • javax.swing.JButton (implements javax.accessibility.Accessible)
            • cytoscape.util.swing.DropDownMenuButton
          • javax.swing.JMenuItem (implements javax.accessibility.Accessible, javax.swing.MenuElement)
            • javax.swing.JMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
              • cytoscape.actions.ArrangeAction
              • cytoscape.layout.ui.DynamicLayoutMenu (implements javax.swing.event.MenuListener)
              • cytoscape.layout.ui.LayoutMenu (implements javax.swing.event.MenuListener)
              • cytoscape.actions.SelectionModeAction (implements javax.swing.event.MenuListener)
            • cytoscape.layout.ui.StaticLayoutMenu (implements java.awt.event.ActionListener)
        • cytoscape.visual.ui.editors.continuous.ContinuousTrackRenderer (implements cytoscape.visual.ui.editors.continuous.VizMapperTrackRenderer)
        • cytoscape.visual.ui.editors.continuous.CyGradientTrackRenderer (implements cytoscape.visual.ui.editors.continuous.VizMapperTrackRenderer)
        • cytoscape.visual.ui.editors.continuous.DiscreteTrackRenderer<T> (implements cytoscape.visual.ui.editors.continuous.VizMapperTrackRenderer)
        • cytoscape.view.InternalFrameComponent (implements java.awt.print.Printable)
        • javax.swing.JFileChooser (implements javax.accessibility.Accessible)
          • cytoscape.actions.CheckBoxFileChooser
          • cytoscape.actions.ExpFileChooser
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • javax.swing.DefaultListCellRenderer (implements javax.swing.ListCellRenderer, java.io.Serializable)
            • cytoscape.visual.ui.FontRenderer
          • javax.swing.table.DefaultTableCellRenderer (implements java.io.Serializable, javax.swing.table.TableCellRenderer)
            • cytoscape.visual.customgraphic.ui.CyCustomGraphicsTableCellRenderer
            • com.l2fprod.common.swing.renderer.DefaultCellRenderer (implements javax.swing.ListCellRenderer)
              • cytoscape.visual.ui.editors.discrete.CustomGraphicsCellRenderer
              • cytoscape.visual.ui.editors.discrete.CyColorCellRenderer
              • cytoscape.visual.ui.editors.discrete.FontCellRenderer
              • cytoscape.visual.ui.editors.discrete.ObjectPositionCellRenderer
              • cytoscape.visual.ui.editors.discrete.ShapeCellRenderer
          • javax.swing.tree.DefaultTreeCellRenderer (implements javax.swing.tree.TreeCellRenderer)
            • cytoscape.visual.customgraphic.ui.CyCustomGraphicsTreeCellRenderer
            • cytoscape.dialogs.plugins.TreeCellRenderer
            • cytoscape.view.TreeCellRenderer
        • javax.swing.JList (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • cytoscape.util.swing.CheckBoxJList (implements javax.swing.event.ListSelectionListener)
          • cytoscape.util.swing.FilterHistoryJList
          • org.jdesktop.swingx.JXList
            • cytoscape.visual.customgraphic.ui.CustomGraphicsBrowser (implements java.beans.PropertyChangeListener)
        • javax.swing.JMenuBar (implements javax.accessibility.Accessible, javax.swing.MenuElement)
          • cytoscape.util.CytoscapeMenuBar
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • cytoscape.util.swing.AttributeImportPanel (implements cytoscape.data.attr.MultiHashMapDefinitionListener)
          • cytoscape.visual.ui.editors.continuous.BelowAndAbovePanel
          • cytoscape.dialogs.ColorScaleTable
          • cytoscape.visual.mappings.continuous.ContinuousLegend
          • cytoscape.visual.customgraphic.ui.CustomGraphicsCellRenderer (implements javax.swing.ListCellRenderer)
          • cytoscape.visual.customgraphic.ui.CustomGraphicsDetailPanel (implements javax.swing.event.ListSelectionListener)
          • cytoscape.util.swing.CyCollapsiblePanel
          • cytoscape.view.cytopanels.CytoPanelImp (implements javax.swing.event.ChangeListener, cytoscape.view.cytopanels.CytoPanel)
          • cytoscape.visual.ui.DefaultViewPanel
          • cytoscape.visual.mappings.discrete.DiscreteLegend
          • cytoscape.visual.ui.FontChooser
          • cytoscape.dialogs.GraphObjectSelection (implements java.awt.event.ActionListener)
          • cytoscape.dialogs.IconPopupButton (implements java.awt.event.ActionListener)
          • cytoscape.dialogs.IntegerEntryField
          • cytoscape.dialogs.JointIntegerEntry
          • cytoscape.util.swing.JStatusBar
          • cytoscape.visual.ui.LabelPlacerGraphic (implements java.beans.PropertyChangeListener)
          • cytoscape.dialogs.LabelTextPanel
          • cytoscape.visual.mappings.LegendTable
          • cytoscape.view.NetworkPanel (implements javax.swing.event.ChangeListener, java.beans.PropertyChangeListener, cytoscape.data.SelectEventListener, javax.swing.event.TreeSelectionListener)
          • cytoscape.util.swing.NetworkSelectorPanel (implements java.beans.PropertyChangeListener)
          • cytoscape.dialogs.NewSlider
          • cytoscape.visual.ui.ObjectPlacerControl (implements java.awt.event.ActionListener, java.beans.PropertyChangeListener)
          • cytoscape.visual.ui.ObjectPlacerGraphic (implements java.beans.PropertyChangeListener)
          • cytoscape.visual.ui.VizMapperMainPanel (implements javax.swing.event.ChangeListener, cytoscape.data.attr.MultiHashMapDefinitionListener, javax.swing.event.PopupMenuListener, java.beans.PropertyChangeListener)
          • cytoscape.visual.ui.editors.continuous.YValueLegendPanel
        • javax.swing.JSlider (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • cytoscape.dialogs.NewSlider.MJSlider (implements javax.swing.event.ChangeListener)
        • javax.swing.JSplitPane (implements javax.accessibility.Accessible)
          • cytoscape.view.cytopanels.BiModalJSplitPane (implements cytoscape.view.cytopanels.CytoPanelContainer)
        • javax.swing.JTable (implements javax.accessibility.Accessible, javax.swing.event.CellEditorListener, javax.swing.event.ListSelectionListener, javax.swing.event.RowSorterListener, javax.swing.Scrollable, javax.swing.event.TableColumnModelListener, javax.swing.event.TableModelListener)
          • cytoscape.util.swing.JTreeTable
        • javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • javax.swing.JTextField (implements javax.swing.SwingConstants)
            • cytoscape.dialogs.NewSlider.MJTextField (implements java.awt.event.ActionListener)
        • javax.swing.JToolBar (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • cytoscape.util.CytoscapeToolBar
        • javax.swing.JTree (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • cytoscape.util.swing.JTreeTable.TreeTableCellRenderer (implements javax.swing.table.TableCellRenderer)
        • cytoscape.visual.ui.editors.continuous.TriangleThumbRenderer (implements org.jdesktop.swingx.multislider.ThumbRenderer)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • cytoscape.util.swing.AboutDialog (implements javax.swing.event.HyperlinkListener)
            • cytoscape.data.AttributeSaverDialog
            • cytoscape.dialogs.preferences.BookmarkDialog (implements java.awt.event.ActionListener, java.awt.event.ItemListener, javax.swing.event.ListSelectionListener)
            • cytoscape.visual.ui.editors.continuous.ContinuousMappingEditorPanel (implements java.beans.PropertyChangeListener)
              • cytoscape.visual.ui.editors.continuous.C2CMappingEditor
              • cytoscape.visual.ui.editors.continuous.C2DMappingEditor
              • cytoscape.visual.ui.editors.continuous.GradientEditorPanel (implements java.beans.PropertyChangeListener)
            • cytoscape.visual.customgraphic.ui.CustomGraphicsManagerDialog
            • cytoscape.visual.ui.DefaultAppearenceBuilder
            • cytoscape.dialogs.EdgeAttributesPopupDetails
            • cytoscape.dialogs.preferences.EditBookmarkDialog
            • cytoscape.dialogs.EditNetworkTitleDialog (implements java.awt.event.ActionListener)
            • cytoscape.dialogs.ExportAsGraphicsFileChooser (implements java.awt.event.ActionListener)
            • cytoscape.dialogs.ExportBitmapOptionsDialog
            • cytoscape.dialogs.ExpressionDataPopupTable
            • cytoscape.dialogs.GinyEdgeControlDialog
            • cytoscape.dialogs.ImportAttributeMatrixDialog
            • cytoscape.dialogs.ImportNetworkDialog (implements java.awt.event.ActionListener, java.awt.event.FocusListener)
            • cytoscape.util.IndeterminateProgressBar
            • cytoscape.layout.ui.LayoutSettingsDialog (implements java.awt.event.ActionListener)
            • cytoscape.visual.ui.LegendDialog
            • cytoscape.dialogs.plugins.LicenseDialog
            • cytoscape.dialogs.logger.LoggerDialog (implements cytoscape.logger.CyLogHandler, java.beans.PropertyChangeListener)
            • cytoscape.visual.ui.editors.continuous.MinMaxDialog
            • cytoscape.dialogs.NetworkMetaDataDialog (implements javax.swing.event.TableModelListener)
            • cytoscape.dialogs.NewStringPopupDialog
            • cytoscape.dialogs.plugins.PluginManageDialog (implements java.awt.event.ActionListener, javax.swing.event.TreeSelectionListener)
            • cytoscape.dialogs.plugins.PluginUpdateDialog (implements javax.swing.event.TreeSelectionListener)
            • cytoscape.dialogs.plugins.PluginUrlDialog
            • cytoscape.visual.ui.PopupFontChooser
            • cytoscape.visual.ui.PopupObjectPositionChooser (implements java.beans.PropertyChangeListener)
            • cytoscape.dialogs.PopupTextArea
            • cytoscape.dialogs.preferences.PreferencesDialog (implements java.beans.PropertyChangeListener)
            • cytoscape.dialogs.preferences.PreferenceValueDialog
            • cytoscape.dialogs.preferences.ProxyServerDialog (implements java.awt.event.ActionListener, java.awt.event.ItemListener)
            • cytoscape.dialogs.SetNestedNetworkDialog (implements javax.swing.event.ListSelectionListener)
            • cytoscape.data.webservice.ui.UnifiedNetworkImportDialog (implements java.beans.PropertyChangeListener)
            • cytoscape.visual.ui.ValueSelectDialog
            • cytoscape.data.webservice.ui.WSImportResultDialog
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • cytoscape.view.CytoscapeDesktop (implements java.beans.PropertyChangeListener)
            • cytoscape.util.CytoscapeProgressMonitor (implements java.lang.Runnable)
  • cytoscape.logger.ConsoleLogger (implements cytoscape.logger.CyLogHandler)
  • cytoscape.visual.mappings.continuous.ContinuousMappingPoint (implements java.lang.Cloneable)
  • cytoscape.visual.mappings.continuous.ContinuousMappingReader
  • cytoscape.visual.mappings.continuous.ContinuousMappingWriter
  • cytoscape.visual.mappings.continuous.ContinuousRangeCalculator
  • cytoscape.util.CreditScreen
  • cytoscape.visual.customgraphic.CustomGraphicsPropertyImpl<T> (implements cytoscape.visual.customgraphic.impl.vector.CustomGraphicsProperty<T>)
  • cytoscape.visual.mappings.rangecalculators.CustomGraphicsRangeValueCalculator (implements cytoscape.visual.mappings.RangeValueCalculator<T>)
  • cytoscape.visual.customgraphic.CustomGraphicsUtil
  • cytoscape.data.CyAttributesImpl (implements cytoscape.data.CyAttributes)
  • cytoscape.data.readers.CyAttributesReader
  • cytoscape.data.CyAttributesUtils
  • cytoscape.data.writers.CyAttributesWriter
  • cytoscape.visual.ui.editors.discrete.CyColorCellRenderer.PaintIcon (implements javax.swing.Icon)
  • cytoscape.util.CyColorChooser
  • cytoscape.visual.ui.editors.discrete.CyComboBoxPropertyEditor.Value
  • cytoscape.command.CyCommandManager
  • cytoscape.command.CyCommandResult
  • cytoscape.visual.customgraphic.impl.CyCustomGraphicsParserFactoryImpl (implements cytoscape.visual.customgraphic.CyCustomGraphicsParserFactory)
  • cytoscape.view.CyDesktopManager
  • cytoscape.CyEdge (implements giny.model.Edge)
  • cytoscape.groups.CyGroupImpl (implements cytoscape.groups.CyGroup)
  • cytoscape.groups.CyGroupManager
  • cytoscape.view.CyHelpBroker
  • cytoscape.layout.CyLayouts
  • cytoscape.logger.CyLogger
  • cytoscape.CyMain (implements cytoscape.init.CyInitParams)
  • cytoscape.view.CyMenus (implements giny.view.GraphViewChangeListener, java.beans.PropertyChangeListener)
  • cytoscape.CyNetworkAdapter (implements cytoscape.CyNetworkListener)
  • cytoscape.CyNetworkEvent
  • cytoscape.util.CyNetworkNaming
  • cytoscape.CyNetworkTitleChange
  • cytoscape.data.CyNetworkUtilities
  • cytoscape.CyNode (implements giny.model.Node)
  • cytoscape.CyStartupListener (implements com.install4j.api.launcher.StartupNotification.Listener)
  • cytoscape.view.cytopanels.CytoPanelState
  • cytoscape.view.cytopanels.CytoPanelUtil
  • cytoscape.Cytoscape
  • cytoscape.CytoscapeInit (implements java.beans.PropertyChangeListener)
  • cytoscape.CytoscapeModifiedNetworkManager (implements java.beans.PropertyChangeListener)
  • cytoscape.plugin.CytoscapePlugin (implements java.beans.PropertyChangeListener)
  • cytoscape.data.readers.CytoscapeSessionReader
  • cytoscape.data.writers.CytoscapeSessionWriter
  • cytoscape.CytoscapeVersion
  • cytoscape.data.webservice.CyWebServiceEventSupport
  • cytoscape.data.webservice.DatabaseSearchResult<R>
  • cytoscape.data.ontology.readers.DBCrossReferenceReader
  • cytoscape.data.ontology.DBCrossReferences
  • cytoscape.data.ontology.DBReference
  • cytoscape.visual.customgraphic.DefaultCyCustomGraphicsParser (implements cytoscape.visual.customgraphic.CyCustomGraphicsParser)
  • javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
    • cytoscape.view.NetworkTreeNode
    • cytoscape.dialogs.plugins.TreeNode
  • ding.view.DGraphView (implements giny.view.GraphView, java.awt.print.Printable)
    • cytoscape.ding.DingNetworkView (implements cytoscape.view.CyNetworkView, java.beans.PropertyChangeListener)
  • java.util.Dictionary<K,V>
    • java.util.Hashtable<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • java.util.Properties
        • cytoscape.plugin.PluginProperties
  • cytoscape.visual.mappings.discrete.DiscreteMappingReader
  • cytoscape.visual.mappings.discrete.DiscreteMappingWriter
  • cytoscape.visual.ui.DiscretePropertySetter
  • cytoscape.visual.mappings.discrete.DiscreteRangeCalculator<T,V>
  • cytoscape.visual.customgraphic.impl.DLayer (implements cytoscape.visual.customgraphic.Layer)
  • cytoscape.visual.parsers.DoubleParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.visual.mappings.rangecalculators.DoubleRangeValueCalculator (implements cytoscape.visual.mappings.RangeValueCalculator<T>)
  • cytoscape.plugin.DownloadableInfo
    • cytoscape.plugin.PluginInfo
    • cytoscape.plugin.ThemeInfo
  • cytoscape.visual.EdgeAppearanceCalculator
  • cytoscape.visual.ui.editors.continuous.EditorValueRangeTracer
  • cytoscape.data.readers.EqnAttrTracker
  • java.util.EventObject (implements java.io.Serializable)
    • cytoscape.data.webservice.CyWebServiceEvent<P>
  • cytoscape.util.Exec
  • cytoscape.data.ExpressionData (implements java.io.Serializable)
  • cytoscape.data.attr.util.ExtensibleMultiHashMapModel
  • javax.swing.filechooser.FileFilter
    • cytoscape.util.CyFileFilter (implements java.io.FilenameFilter)
      • cytoscape.util.GMLFileFilter
      • cytoscape.util.NNFFileFilter
      • cytoscape.util.SIFFileFilter
      • cytoscape.util.XGMMLFileFilter
  • cytoscape.util.FileUtil
  • fing.model.FingExtensibleGraphPerspective
    • cytoscape.giny.FingCyNetwork (implements cytoscape.CyNetwork, giny.model.GraphPerspective)
  • fing.model.FingExtensibleRootGraph
    • cytoscape.giny.CytoscapeFingRootGraph (implements cytoscape.giny.CytoscapeRootGraph)
  • cytoscape.view.FlagAndSelectionHandler (implements giny.view.GraphViewChangeListener, cytoscape.data.SelectEventListener)
  • cytoscape.visual.mappings.FlatInterpolator (implements cytoscape.visual.mappings.Interpolator)
  • cytoscape.data.annotation.FlattenIntVectors
  • cytoscape.visual.parsers.FloatParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.visual.mappings.rangecalculators.FloatRangeValueCalculator (implements cytoscape.visual.mappings.RangeValueCalculator<T>)
  • java.awt.event.FocusAdapter (implements java.awt.event.FocusListener)
    • cytoscape.visual.mappings.continuous.PointTextListener
  • cytoscape.visual.converter.FontConverter (implements cytoscape.visual.converter.ValueToStringConverter)
  • cytoscape.visual.parsers.FontParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.data.servers.getCanonicalName
  • cytoscape.data.servers.getCommonName
  • cytoscape.actions.GinyUtils
  • cytoscape.visual.GlobalAppearance
  • cytoscape.data.readers.GMLNode (implements java.util.Comparator<T>)
  • cytoscape.data.readers.GMLParser
  • cytoscape.data.readers.GMLTree
  • cytoscape.data.readers.GMLWriter
  • cytoscape.visual.customgraphic.paint.GradientPaintFactory (implements cytoscape.render.stateful.PaintFactory)
  • cytoscape.visual.parsers.GraphicsParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.render.stateful.GraphLOD
    • cytoscape.ding.CyGraphLOD (implements java.beans.PropertyChangeListener)
    • ding.view.PrintLOD
      • cytoscape.ding.CyGraphAllLOD
  • cytoscape.util.GraphSetUtils
  • cytoscape.view.GraphViewController (implements giny.model.GraphPerspectiveChangeListener)
  • cytoscape.dialogs.GridBagGroup
  • cytoscape.visual.ui.HideEdgeListener (implements java.beans.PropertyChangeListener)
  • cytoscape.visual.ui.HideNodeListener (implements java.beans.PropertyChangeListener)
  • cytoscape.view.IconTableCellRenderer (implements javax.swing.table.TableCellRenderer)
  • cytoscape.visual.customgraphic.IDGenerator
  • javax.swing.ImageIcon (implements javax.accessibility.Accessible, javax.swing.Icon, java.io.Serializable)
    • cytoscape.visual.ui.icon.VisualPropertyIcon
      • cytoscape.visual.ui.icon.ArrowIcon
      • cytoscape.visual.ui.icon.LineTypeIcon
      • cytoscape.visual.ui.icon.NodeIcon
  • cytoscape.visual.customgraphic.ImageUtil
  • cytoscape.data.ImportHandler
  • cytoscape.plugin.InstallablePlugin (implements cytoscape.plugin.Installable)
  • cytoscape.plugin.InstallableTheme (implements cytoscape.plugin.Installable)
  • cytoscape.dialogs.IntegerEntryField.PositiveIntegerListener (implements java.awt.event.FocusListener)
  • cytoscape.data.Interaction
  • cytoscape.data.writers.InteractionWriter
  • cytoscape.visual.mappings.InterpolatorFactory
  • cytoscape.util.JnlpWriterUtil
  • cytoscape.dialogs.JointIntegerEntry.CopyField1To2Listener (implements java.awt.event.FocusListener)
  • cytoscape.dialogs.JointIntegerEntry.LockedItemListener (implements java.awt.event.ItemListener)
  • cytoscape.data.readers.KeyValue
  • cytoscape.visual.LabelPosition
  • cytoscape.visual.parsers.LabelPositionParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.layout.LayoutAdapter (implements cytoscape.layout.CyLayoutAlgorithm)
  • cytoscape.layout.ui.LayoutMenuManager (implements javax.swing.event.MenuListener)
  • cytoscape.layout.LayoutTask (implements cytoscape.task.Task)
  • cytoscape.visual.mappings.LegendTable.LegendCellRenderer (implements javax.swing.table.TableCellRenderer)
  • cytoscape.visual.parsers.LineStyleParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.data.servers.loadAnnotation
  • cytoscape.data.servers.loadAnnotationFromFlatFiles
  • cytoscape.visual.customgraphic.LoadImageTask (implements java.util.concurrent.Callable<V>)
  • cytoscape.actions.LoadNetworkTask (implements cytoscape.task.Task)
  • cytoscape.data.servers.loadThesaurus
  • cytoscape.util.MacAppConfig
  • cytoscape.dialogs.plugins.ManagerModel (implements javax.swing.tree.TreeModel)
  • cytoscape.plugin.ManagerUtil
  • cytoscape.visual.ui.MapperAndAttribute
  • cytoscape.visual.mappings.MappingFactory
  • cytoscape.visual.ui.MappingKeyFactory
  • cytoscape.visual.mappings.MappingManagerImpl (implements cytoscape.visual.mappings.MappingManager)
  • cytoscape.visual.mappings.MappingUtil
  • cytoscape.util.MathUtil
  • cytoscape.util.MemoryReporter
  • cytoscape.data.readers.MetadataParser
  • cytoscape.util.MinMaxDouble
  • cytoscape.util.MinMaxInt
  • cytoscape.util.Misc
  • cytoscape.dialogs.MiscGB
  • cytoscape.util.ModulePropertiesImpl (implements cytoscape.util.ModuleProperties)
    • cytoscape.layout.LayoutProperties (implements cytoscape.layout.TunableListener)
  • cytoscape.data.mRNAMeasurement (implements java.io.Serializable)
  • cytoscape.data.attr.util.MultiHashMapFactory
  • cytoscape.data.attr.util.MultiHashMapHelpers
  • cytoscape.util.MutableBool
  • cytoscape.util.MutableInt
  • cytoscape.util.MutableString
  • cytoscape.visual.ui.NestedNetworkListener (implements java.beans.PropertyChangeListener)
  • cytoscape.util.NestedNetworkViewUpdater (implements java.beans.PropertyChangeListener)
  • cytoscape.data.NetworkData
  • cytoscape.data.webservice.util.NetworkExpansionMenu (implements java.beans.PropertyChangeListener)
  • cytoscape.view.NetworkViewManager (implements javax.swing.event.ChangeListener, javax.swing.event.InternalFrameListener, java.beans.PropertyChangeListener, java.awt.event.WindowFocusListener)
  • cytoscape.visual.ui.NewMappingBuilder
  • cytoscape.data.readers.NNFParser
  • cytoscape.visual.NodeAppearanceCalculator
  • cytoscape.visual.converter.NodeShapeConverter (implements cytoscape.visual.converter.ValueToStringConverter)
  • cytoscape.visual.parsers.NodeShapeParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.visual.mappings.rangecalculators.NodeShapeRangeValueCalculator (implements cytoscape.visual.mappings.RangeValueCalculator<T>)
  • cytoscape.visual.mappings.NumberInterpolator (implements cytoscape.visual.mappings.Interpolator)
    • cytoscape.visual.mappings.LinearNumberInterpolator
      • cytoscape.visual.mappings.LinearNumberToColorInterpolator
      • cytoscape.visual.mappings.LinearNumberToNumberInterpolator
  • cytoscape.visual.converter.ObjectPositionConverter (implements cytoscape.visual.converter.ValueToStringConverter)
  • cytoscape.visual.parsers.ObjectPositionParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.visual.parsers.ObjectToString
  • cytoscape.data.ontology.readers.OBOFlatFileReader (implements cytoscape.data.ontology.readers.OntologyReader)
  • cytoscape.data.annotation.Ontology (implements java.io.Serializable)
  • cytoscape.data.annotation.OntologyDescription (implements java.io.Serializable)
  • cytoscape.data.ontology.OntologyFactory
  • cytoscape.data.annotation.readers.OntologyFlatFileReader
  • cytoscape.data.servers.OntologyServer (implements java.beans.PropertyChangeListener)
  • cytoscape.data.annotation.OntologyTerm (implements java.io.Serializable)
  • cytoscape.data.annotation.readers.OntologyXmlReader
  • cytoscape.util.OpenBrowser
  • cytoscape.util.export.PDFExporter (implements cytoscape.util.export.Exporter)
  • cytoscape.util.PercentUtil
  • cytoscape.visual.customgraphic.PersistImageTask (implements cytoscape.task.Task)
  • cytoscape.dialogs.PhoebeNodeControl
  • cytoscape.dialogs.PhoebeNodeControl.SliderListener (implements javax.swing.event.ChangeListener)
  • cytoscape.plugin.PluginFileReader
  • cytoscape.dialogs.plugins.PluginIndex
  • cytoscape.plugin.PluginInfo.AuthorInfo
  • cytoscape.plugin.PluginInquireAction
  • cytoscape.plugin.PluginManager
  • cytoscape.plugin.PluginManagerInquireTask (implements cytoscape.task.Task)
  • cytoscape.plugin.PluginTracker
  • cytoscape.plugin.PluginVersionUtils
  • cytoscape.visual.ui.PopupIconChooser
  • cytoscape.visual.ui.PopupStringChooser
  • cytoscape.util.PropUtil
  • cytoscape.util.ProxyHandler (implements java.beans.PropertyChangeListener)
  • cytoscape.util.export.PSExporter (implements cytoscape.util.export.Exporter)
  • cytoscape.visual.mappings.discrete.RandomColorListener (implements java.awt.event.ActionListener)
  • cytoscape.visual.mappings.RangeValueCalculatorFactoryImpl (implements cytoscape.visual.mappings.RangeValueCalculatorFactory)
  • cytoscape.util.RecentlyOpenedTracker
  • cytoscape.visual.ui.RedrawTask (implements cytoscape.task.Task)
  • java.rmi.server.RemoteObject (implements java.rmi.Remote, java.io.Serializable)
    • java.rmi.server.RemoteServer
      • java.rmi.server.UnicastRemoteObject
        • cytoscape.data.servers.BioDataServerRmi (implements cytoscape.data.servers.BioDataServerInterface, java.io.Serializable)
  • cytoscape.visual.customgraphic.SaveImageTask (implements java.util.concurrent.Callable<V>)
  • cytoscape.util.ScalerFactory
  • cytoscape.data.SelectEvent
  • cytoscape.data.SelectFilter (implements giny.filter.Filter, giny.model.GraphPerspectiveChangeListener)
  • cytoscape.data.Semantics
  • cytoscape.visual.strokes.ShapeStroke (implements cytoscape.visual.strokes.WidthStroke)
    • cytoscape.visual.strokes.ContiguousArrowStroke
    • cytoscape.visual.strokes.DotStroke
    • cytoscape.visual.strokes.ParallelStroke
    • cytoscape.visual.strokes.PipeStroke
      • cytoscape.visual.strokes.BackwardSlashStroke
      • cytoscape.visual.strokes.ForwardSlashStroke
      • cytoscape.visual.strokes.VerticalSlashStroke
    • cytoscape.visual.strokes.SeparateArrowStroke
    • cytoscape.visual.strokes.SineWaveStroke
  • cytoscape.dialogs.ShrinkExpandGraphUI
  • cytoscape.data.servers.status
  • cytoscape.visual.parsers.StringParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.visual.mappings.rangecalculators.StringRangeValueCalculator (implements cytoscape.visual.mappings.RangeValueCalculator<T>)
  • cytoscape.visual.SubjectBase
    • cytoscape.visual.mappings.AbstractMapping (implements cytoscape.visual.mappings.ObjectMapping)
      • cytoscape.visual.mappings.ContinuousMapping
      • cytoscape.visual.mappings.DiscreteMapping
      • cytoscape.visual.mappings.PassThroughMapping
    • cytoscape.visual.customgraphic.CustomGraphicsManager (implements java.beans.PropertyChangeListener)
    • cytoscape.visual.GlobalAppearanceCalculator (implements java.lang.Cloneable)
    • cytoscape.visual.VisualMappingManager
  • cytoscape.util.export.SVGExporter (implements cytoscape.util.export.Exporter)
  • cytoscape.util.SwingWorker
  • cytoscape.data.readers.TextFileReader
  • cytoscape.data.readers.TextHttpReader
  • cytoscape.data.readers.TextJarReader
  • cytoscape.visual.customgraphic.paint.TexturePaintFactory (implements cytoscape.render.stateful.PaintFactory)
  • cytoscape.data.synonyms.Thesaurus (implements java.io.Serializable)
  • cytoscape.data.synonyms.readers.ThesaurusFlatFileReader
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • cytoscape.command.CyCommandException
      • cytoscape.data.webservice.CyWebServiceException
      • cytoscape.plugin.PluginException
        • cytoscape.plugin.DuplicatePluginClassException
        • cytoscape.plugin.InvalidDownloadable
        • cytoscape.plugin.ManagerException
        • cytoscape.plugin.NotAPluginException
        • cytoscape.plugin.TrackerException
        • cytoscape.plugin.WebstartException
      • java.lang.RuntimeException
        • cytoscape.visual.DuplicateCalculatorNameException
        • cytoscape.data.readers.GMLException
        • cytoscape.data.readers.XGMMLException
  • cytoscape.util.TopologicalSort
  • cytoscape.util.Transform
  • cytoscape.layout.Tunable (implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, java.awt.event.FocusListener, java.awt.event.ItemListener, javax.swing.event.ListSelectionListener)
  • undo.Undo
    • cytoscape.util.undo.CyUndo
  • cytoscape.visual.customgraphic.URLImageCustomGraphicsParser (implements cytoscape.visual.customgraphic.CyCustomGraphicsParser)
  • cytoscape.util.URLUtil
  • cytoscape.visual.converter.ValueToStringConverterManager
  • cytoscape.visual.VisualStyle (implements java.lang.Cloneable)
  • cytoscape.data.readers.VisualStyleBuilder
  • cytoscape.visual.ui.VizMapBypassNetworkListener (implements java.beans.PropertyChangeListener)
  • cytoscape.data.webservice.WebServiceClientImpl<S> (implements cytoscape.data.webservice.CyWebServiceEventListener, java.io.Serializable, cytoscape.data.webservice.WebServiceClient<S>)
    • cytoscape.data.webservice.WebServiceClientImplWithGUI<S,U> (implements cytoscape.data.webservice.ui.WebServiceClientGUI<U>)
  • cytoscape.data.webservice.WebServiceClientManager
  • cytoscape.data.webservice.ui.WebServiceContextMenu (implements ding.view.EdgeContextMenuListener, ding.view.NodeContextMenuListener)
  • cytoscape.data.webservice.ui.WebServiceContextMenuListener (implements java.beans.PropertyChangeListener)
  • cytoscape.data.webservice.util.WebServiceThemeInstall
  • cytoscape.util.swing.WidestStringComboBoxPopupMenuListener (implements javax.swing.event.PopupMenuListener)
  • cytoscape.util.shadegrown.WindowUtilities (implements javax.swing.WindowConstants)
  • cytoscape.data.writers.XGMMLWriter
  • cytoscape.visual.strokes.ZigzagStroke (implements cytoscape.visual.strokes.WidthStroke)
  • cytoscape.util.ZipUtil

Interface Hierarchy

• cytoscape.data.AttributeFilter
• cytoscape.data.AttributeValueVisitor
• java.lang.Cloneable
  • cytoscape.visual.calculators.Calculator
  • cytoscape.visual.mappings.ObjectMapping
• cytoscape.visual.customgraphic.impl.vector.CustomGraphicsProperty<T>
• cytoscape.visual.mappings.CustomGraphicsRangeValueRenderer<T>
• cytoscape.visual.mappings.CustomMapping
• cytoscape.data.CyAttributes
• cytoscape.command.CyCommandHandler
• cytoscape.command.CyCommandNamespace
• cytoscape.visual.customgraphic.CyCustomGraphics
• cytoscape.visual.customgraphic.CyCustomGraphicsParser
• cytoscape.visual.customgraphic.CyCustomGraphicsParserFactory
• cytoscape.groups.CyGroup
• cytoscape.groups.CyGroupChangeListener
• cytoscape.groups.CyGroupViewer
• cytoscape.init.CyInitParams
• cytoscape.layout.CyLayoutAlgorithm
• cytoscape.logger.CyLogHandler
• cytoscape.CyNetworkData
• cytoscape.CyNetworkListener
• cytoscape.view.cytopanels.CytoPanel
• cytoscape.view.cytopanels.CytoPanelContainer
• giny.view.EdgeView
  • cytoscape.view.CyEdgeView
• cytoscape.visual.ui.EditorManager
• java.util.EventListener
  • cytoscape.view.cytopanels.CytoPanelListener
  • cytoscape.data.webservice.CyWebServiceEventListener
• cytoscape.util.export.Exporter
• giny.model.GraphPerspective
  • cytoscape.CyNetwork
• cytoscape.data.readers.GraphReader
• giny.view.GraphView
  • cytoscape.view.CyNetworkView
• cytoscape.view.GraphViewHandler
• cytoscape.plugin.Installable
• cytoscape.visual.mappings.Interpolator
• java.util.Iterator<E>
  • cytoscape.data.attr.CountedIterator
• cytoscape.visual.customgraphic.Layer
• cytoscape.visual.mappings.MappingManager
• cytoscape.util.ModuleProperties
• cytoscape.util.MonitoredTask
  • cytoscape.layout.LayoutAlgorithm
• cytoscape.data.attr.MultiHashMap
• cytoscape.data.attr.MultiHashMapDefinition
• cytoscape.data.attr.MultiHashMapDefinitionListener
• cytoscape.data.attr.MultiHashMapListener
• cytoscape.data.readers.NestedNetworkReader
• cytoscape.data.webservice.NetworkImportWebServiceClient
• giny.view.NodeView
  • cytoscape.view.CyNodeView
• cytoscape.data.ontology.readers.OntologyReader
• cytoscape.visual.mappings.RangeValueCalculator<T>
• cytoscape.visual.mappings.RangeValueCalculatorFactory
• java.rmi.Remote
  • cytoscape.data.servers.BioDataServerInterface
• cytoscape.visual.customgraphic.RenderingContext<T>
• giny.model.RootGraph
  • cytoscape.giny.CytoscapeRootGraph
• cytoscape.util.Scaler
• cytoscape.data.SelectEventListener
• java.awt.Stroke
  • cytoscape.visual.strokes.WidthStroke
• cytoscape.visual.customgraphic.Taggable
• cytoscape.util.TopoGraphNode
• org.jdesktop.swingx.multislider.TrackRenderer
  • cytoscape.visual.ui.editors.continuous.VizMapperTrackRenderer
• javax.swing.tree.TreeModel
  • cytoscape.util.swing.TreeTableModel
• cytoscape.layout.TunableListener
• cytoscape.visual.parsers.ValueParser
• cytoscape.visual.converter.ValueToStringConverter
• cytoscape.visual.customgraphic.impl.vector.VectorCustomGraphics
• cytoscape.visual.VisualProperty
• cytoscape.visual.VisualPropertyDependency
• cytoscape.data.webservice.WebServiceClient<S>
• cytoscape.data.webservice.ui.WebServiceClientGUI<U>
• cytoscape.util.swing.WidestStringProvider

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • cytoscape.data.CyAttributesUtils.AttributeType
    • cytoscape.data.ontology.OntologyTerm.SynonymType
    • cytoscape.data.ontology.GeneOntology.GOAspect
    • cytoscape.data.ontology.readers.OBOTags
    • cytoscape.data.ontology.readers.OBOHeaderTags
    • cytoscape.data.ontology.readers.DBXrefKeywords
    • cytoscape.data.readers.MetadataEntries
    • cytoscape.data.readers.GMLTag
    • cytoscape.data.servers.OntologyServer.OntologyType
    • cytoscape.data.synonyms.AliasType
    • cytoscape.data.webservice.WebServiceClientManager.ClientType
    • cytoscape.data.webservice.CyWebServiceException.WSErrorCode
    • cytoscape.data.webservice.CyWebServiceEvent.WSEventType
    • cytoscape.data.webservice.CyWebServiceEvent.WSResponseType
    • cytoscape.data.webservice.ui.WebServiceClientGUI.IconSize
    • cytoscape.dialogs.plugins.PluginManageDialog.PluginInstallStatus
    • cytoscape.dialogs.plugins.PluginManageDialog.CommonError
    • cytoscape.groups.CyGroupViewer.ChangeType
    • cytoscape.groups.CyGroupChangeListener.ChangeType
    • cytoscape.logger.LogLevel
    • cytoscape.plugin.PluginXml
    • cytoscape.plugin.PluginStatus
    • cytoscape.plugin.PluginProperties.PluginProperty
    • cytoscape.plugin.PluginInfo.FileType
    • cytoscape.plugin.DownloadableType
    • cytoscape.plugin.Category
    • cytoscape.util.ScalingMethod
    • cytoscape.view.CyDesktopManager.Arrange
    • cytoscape.view.ColumnTypes
    • cytoscape.view.cytopanels.CytoPanelName
    • cytoscape.visual.VisualPropertyType
    • cytoscape.visual.VisualPropertyDependency.Definition
    • cytoscape.visual.NodeShape
    • cytoscape.visual.LineStyle
    • cytoscape.visual.ArrowShape
    • cytoscape.visual.mappings.MappingType
    • cytoscape.visual.strokes.PipeStroke.Type
    • cytoscape.visual.ui.VizMapperMainPanel.DefaultEditor
    • cytoscape.visual.ui.EditorDisplayer
    • cytoscape.visual.ui.EditorDisplayer.EditorType