cytoscape.data.writers
Class CytoscapeSessionWriter

java.lang.Object
  cytoscape.data.writers.CytoscapeSessionWriter

public class CytoscapeSessionWriter
extends Object

Field Summary

int	EDGE
int	NODE

Constructor Summary

CytoscapeSessionWriter(String sessionName)

Method Summary

void	createCySession(String sessionName)
void	makeXGMML(String xgmmlFile, CyNetwork network, CyNetworkView view)
void	preparePropFiles()
protected void	walkTree(DefaultMutableTreeNode node)
void	write() Write currnt session to a cys file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NODE

public final int NODE

See Also:

Constant Field Values

EDGE

public final int EDGE

See Also:

Constant Field Values

Constructor Detail

CytoscapeSessionWriter

public CytoscapeSessionWriter(String sessionName)

Method Detail

write

public void write()

Write currnt session to a cys file.

preparePropFiles

public void preparePropFiles()

makeXGMML

public void makeXGMML(String xgmmlFile,
                      CyNetwork network,
                      CyNetworkView view)
               throws IOException

Throws:

IOException

createCySession

public void createCySession(String sessionName)
                     throws Exception

Throws:

Exception

walkTree

protected void walkTree(DefaultMutableTreeNode node)
                 throws javax.xml.bind.JAXBException

Parameters:

node -

Throws:

javax.xml.bind.JAXBException