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Constant Field Values

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cytoscape.*

cytoscape.*

cytoscape.CyNetworkEvent
`public static final int`	`BEGIN`	`0`
`public static final int`	`END`	`1`
`public static final int`	`GRAPH_REPLACED`	`10`
`public static final int`	`UNKNOWN`	`-1`

cytoscape.Cytoscape
`public static final String`	`NETWORK_LOADED`	`"NETWORK_LOADED"`
`public static final String`	`NETWORK_MODIFIED`	`"NETWORK_MODIFIED"`
`public static final String`	`NETWORK_SAVED`	`"NETWORK_SAVED"`
`public static final String`	`PREFERENCE_MODIFIED`	`"PREFERENCE_MODIFIED"`
`public static final String`	`PREFERENCES_UPDATED`	`"PREFERENCES_UPDATED"`
`public static final int`	`SELECT_EDGES_ONLY`	`2`
`public static final int`	`SELECT_NODES_AND_EDGES`	`3`
`public static final int`	`SELECT_NODES_ONLY`	`1`
`public static final int`	`SESSION_CHANGED`	`2`
`public static final int`	`SESSION_CLOSED`	`3`
`public static final int`	`SESSION_NEW`	`0`
`public static final int`	`SESSION_OPENED`	`1`

cytoscape.CytoscapeModifiedNetworkManager
`public static final String`	`CLEAN`	`"Clean"`
`public static final String`	`MODIFIED`	`"Modified"`

cytoscape.actions.*

cytoscape.actions.ExportAction
`public static final String`	`MENU_LABEL`	`"Export As..."`

cytoscape.actions.ExportAsGraphicsAction
`public static final String`	`MENU_LABEL`	`"Network As Graphics"`

cytoscape.actions.PreferenceAction
`public static final String`	`MENU_LABEL`	`"Preferences..."`

cytoscape.actions.PrintAction
`public static final String`	`MENU_LABEL`	`"Print..."`

cytoscape.data.*

cytoscape.data.CyAttributes
`public static final byte`	`TYPE_BOOLEAN`	`1`
`public static final byte`	`TYPE_COMPLEX`	`-4`
`public static final byte`	`TYPE_FLOATING`	`2`
`public static final byte`	`TYPE_INTEGER`	`3`
`public static final byte`	`TYPE_SIMPLE_LIST`	`-2`
`public static final byte`	`TYPE_SIMPLE_MAP`	`-3`
`public static final byte`	`TYPE_STRING`	`4`
`public static final byte`	`TYPE_UNDEFINED`	`-1`

cytoscape.data.ExpressionData
`public static final int`	`LAMBDA`	`1`
`public static final int`	`MAX_LINE_SIZE`	`8192`
`public static final int`	`NONE`	`2`
`public static final int`	`PVAL`	`0`
`public static final int`	`UNKNOWN`	`3`

cytoscape.data.FlagEvent
`public static final int`	`EDGE_SET`	`3`
`public static final int`	`NODE_SET`	`2`
`public static final int`	`SINGLE_EDGE`	`1`
`public static final int`	`SINGLE_NODE`	`0`

cytoscape.data.GraphObjAttributes
`public static final String`	`DEFAULT_CATEGORY`	`"unknown"`

cytoscape.data.SelectEvent
`public static final int`	`EDGE_SET`	`3`
`public static final int`	`NODE_SET`	`2`
`public static final int`	`SINGLE_EDGE`	`1`
`public static final int`	`SINGLE_NODE`	`0`

cytoscape.data.Semantics
`public static final String`	`ALIASES`	`"aliases"`
`public static final String`	`BIOLOGICAL_PROCESS`	`"biological_process"`
`public static final String`	`CANONICAL_NAME`	`"canonicalName"`
`public static final String`	`CELLULAR_COMPONENT`	`"cellular_component"`
`public static final String`	`COMMON_NAME`	`"commonName"`
`public static final String`	`DNA`	`"DNA"`
`public static final String`	`GO_ALIASES`	`"GO Aliases"`
`public static final String`	`GO_COMMON_NAME`	`"GO Common Name"`
`public static final String`	`IDENTIFIER`	`"identifier"`
`public static final String`	`INTERACTION`	`"interaction"`
`public static final String`	`LABEL`	`"label"`
`public static final String`	`MOLECULAR_FUNCTION`	`"molecular_function"`
`public static final String`	`MOLECULE_TYPE`	`"molecule_type"`
`public static final String`	`PROTEIN`	`"protein"`
`public static final String`	`RNA`	`"RNA"`
`public static final String`	`SPECIES`	`"species"`

cytoscape.data.annotation.OntologyMapperDialog
`public static final String`	`GO_BIOLOGICAL_PROCESS`	`"GO Biological Process"`
`public static final String`	`GO_CELLULAR_COMPONENT`	`"GO Cellular Component"`
`public static final String`	`GO_MOLECULAR_FUNCTION`	`"GO Molecular Function"`

cytoscape.data.attr.MultiHashMapDefinition
`public static final byte`	`TYPE_BOOLEAN`	`1`
`public static final byte`	`TYPE_FLOATING_POINT`	`2`
`public static final byte`	`TYPE_INTEGER`	`3`
`public static final byte`	`TYPE_STRING`	`4`

cytoscape.data.readers.CytoscapeSessionReader
`public static final String`	`CYSESSION`	`"cysession.xml"`

cytoscape.data.readers.VisualStyleBuilder
`protected static final int`	`DEFAULT_LINE_WIDTH`	`1`
`protected static final byte`	`DEFAULT_SHAPE`	`8`

cytoscape.data.readers.XGMMLReader
`protected static final String`	`BOOLEAN_TYPE`	`"boolean"`
`protected static final String`	`COMPLEX_TYPE`	`"complex"`
`protected static final String`	`FLOAT_TYPE`	`"real"`
`protected static final String`	`INT_TYPE`	`"integer"`
`protected static final String`	`LIST_TYPE`	`"list"`
`protected static final String`	`MAP_TYPE`	`"map"`
`protected static final String`	`STRING_TYPE`	`"string"`

cytoscape.data.servers.ui.AnotationPanelDescriptor
`public static final String`	`IDENTIFIER`	`"ANNOTATION_CHOOSE_PANEL"`

cytoscape.data.servers.ui.ManifestFileSelectionPanelDescriptor
`public static final String`	`IDENTIFIER`	`"SELECT_OLDFILE_PANEL"`

cytoscape.data.servers.ui.OboPanelDescriptor
`public static final String`	`IDENTIFIER`	`"OBO_PANEL"`

cytoscape.data.servers.ui.SelectFormatPanelDescriptor
`public static final String`	`IDENTIFIER`	`"INTRODUCTION_PANEL"`

cytoscape.data.servers.ui.SpeciesPanelDescriptor
`public static final String`	`IDENTIFIER`	`"SPECIES_PANEL"`

cytoscape.data.writers.CytoscapeSessionWriter
`public final int`	`EDGE`	`2`
`public final int`	`NODE`	`1`

cytoscape.data.writers.XGMMLWriter
`public static final String`	`BACKGROUND`	`"backgroundColor"`
`protected static final String`	`BOOLEAN_TYPE`	`"boolean"`
`protected static final String`	`COMPLEX_TYPE`	`"complex"`
`protected static final String`	`FLOAT_TYPE`	`"real"`
`public static final String`	`GRAPH_VIEW_CENTER_X`	`"GRAPH_VIEW_CENTER_X"`
`public static final String`	`GRAPH_VIEW_CENTER_Y`	`"GRAPH_VIEW_CENTER_Y"`
`public static final String`	`GRAPH_VIEW_ZOOM`	`"GRAPH_VIEW_ZOOM"`
`protected static final String`	`INT_TYPE`	`"integer"`
`protected static final String`	`LIST_TYPE`	`"list"`
`protected static final String`	`MAP_TYPE`	`"map"`
`protected static final String`	`STRING_TYPE`	`"string"`

cytoscape.generated.*

cytoscape.generated.impl.JAXBVersion
`public static final String`	`version`	`"1.0.4"`

cytoscape.generated.impl.runtime.MSVValidator
`public static final String`	`DUMMY_ELEMENT_NS`	`"http://java.sun.com/jaxb/xjc/dummy-elements"`

cytoscape.generated2.*

cytoscape.generated2.impl.JAXBVersion
`public static final String`	`version`	`"1.0.4"`

cytoscape.generated2.impl.runtime.MSVValidator
`public static final String`	`DUMMY_ELEMENT_NS`	`"http://java.sun.com/jaxb/xjc/dummy-elements"`

cytoscape.init.*

cytoscape.init.CyInitParams
`public static final int`	`EMBEDDED_WINDOW`	`4`
`public static final int`	`ERROR`	`0`
`public static final int`	`GUI`	`1`
`public static final int`	`LIBRARY`	`3`
`public static final int`	`TEXT`	`2`

cytoscape.layout.*

cytoscape.layout.AttributeLayout
`public static final int`	`CLEAR_OBJECTS`	`2`
`public static final int`	`CREATE_EDGES`	`1`
`public static final int`	`DO_LAYOUT`	`0`

cytoscape.util.*

cytoscape.util.CytoscapeMenuBar
`public static final String`	`DEFAULT_MENU_SPECIFIER`	`"Tools"`
`protected static final int`	`NO_INDEX`	`-2`

cytoscape.util.CytoscapeProgressMonitor
`public static final int`	`ONE_SECOND`	`1000`

cytoscape.util.FileUtil
`public static final String`	`urlPattern`	`"^(jar\\:)?(\\w+\\:\\/+\\S+)(\\!\\/\\S*)?$"`

cytoscape.util.GraphSetUtils
`protected static final int`	`DIFFERENCE`	`2`
`protected static final int`	`INTERSECTION`	`1`
`protected static final int`	`UNION`	`0`

cytoscape.view.*

cytoscape.view.cytopanels.BiModalJSplitPane
`public static final int`	`MODE_HIDE_SPLIT`	`2`
`public static final String`	`MODE_PROPERTY`	`"MODE_PROPERTY"`
`public static final int`	`MODE_SHOW_SPLIT`	`1`

cytoscape.visual.*

cytoscape.visual.CalculatorIO
`public static final String`	`dirHeader`	`"cytoscape.visual.calculators."`
`public static final String`	`edgeAppearanceBaseKey`	`"edgeAppearanceCalculator"`
`public static final String`	`edgeArrowBaseKey`	`"edgeArrowCalculator"`
`public static final String`	`edgeArrowClassName`	`"EdgeArrowCalculator"`
`public static final String`	`edgeColorBaseKey`	`"edgeColorCalculator"`
`public static final String`	`edgeColorClassName`	`"EdgeColorCalculator"`
`public static final String`	`edgeFontFaceBaseKey`	`"edgeFontFaceCalculator"`
`public static final String`	`edgeFontFaceClassName`	`"EdgeFontFaceCalculator"`
`public static final String`	`edgeFontSizeBaseKey`	`"edgeFontSizeCalculator"`
`public static final String`	`edgeFontSizeClassName`	`"EdgeFontSizeCalculator"`
`public static final String`	`edgeLabelBaseKey`	`"edgeLabelCalculator"`
`public static final String`	`edgeLabelClassName`	`"EdgeLabelCalculator"`
`public static final String`	`edgeLineTypeBaseKey`	`"edgeLineTypeCalculator"`
`public static final String`	`edgeLineTypeClassName`	`"EdgeLineTypeCalculator"`
`public static final String`	`edgeToolTipBaseKey`	`"edgeToolTipCalculator"`
`public static final String`	`edgeToolTipClassName`	`"EdgeToolTipCalculator"`
`public static final String`	`globalAppearanceBaseKey`	`"globalAppearanceCalculator"`
`public static final String`	`nodeAppearanceBaseKey`	`"nodeAppearanceCalculator"`
`public static final String`	`nodeColorBaseKey`	`"nodeColorCalculator"`
`public static final String`	`nodeColorClassName`	`"NodeColorCalculator"`
`public static final String`	`nodeFontFaceBaseKey`	`"nodeFontFaceCalculator"`
`public static final String`	`nodeFontFaceClassName`	`"NodeFontFaceCalculator"`
`public static final String`	`nodeFontSizeBaseKey`	`"nodeFontSizeCalculator"`
`public static final String`	`nodeFontSizeClassName`	`"NodeFontSizeCalculator"`
`public static final String`	`nodeLabelBaseKey`	`"nodeLabelCalculator"`
`public static final String`	`nodeLabelClassName`	`"NodeLabelCalculator"`
`public static final String`	`nodeLineTypeBaseKey`	`"nodeLineTypeCalculator"`
`public static final String`	`nodeLineTypeClassName`	`"NodeLineTypeCalculator"`
`public static final String`	`nodeShapeBaseKey`	`"nodeShapeCalculator"`
`public static final String`	`nodeShapeClassName`	`"NodeShapeCalculator"`
`public static final String`	`nodeSizeBaseKey`	`"nodeSizeCalculator"`
`public static final String`	`nodeSizeClassName`	`"NodeSizeCalculator"`
`public static final String`	`nodeToolTipBaseKey`	`"nodeToolTipCalculator"`
`public static final String`	`nodeToolTipClassName`	`"NodeToolTipCalculator"`

cytoscape.visual.NodeAppearanceCalculator
`public static final String`	`nodeBorderColorBypass`	`"node.borderColor"`
`public static final String`	`nodeFillColorBypass`	`"node.fillColor"`
`public static final String`	`nodeFontBypass`	`"node.font"`
`public static final String`	`nodeHeightBypass`	`"node.height"`
`public static final String`	`nodeLabelBypass`	`"node.label"`
`public static final String`	`nodeLabelColorBypass`	`"node.labelColor"`
`public static final String`	`nodeLineTypeBypass`	`"node.lineType"`
`public static final String`	`nodeShapeBypass`	`"node.shape"`
`public static final String`	`nodeToolTipBypass`	`"node.toolTip"`
`public static final String`	`nodeWidthBypass`	`"node.width"`

cytoscape.visual.ShapeNodeRealizer
`public static final byte`	`DIAMOND`	`7`
`public static final byte`	`ELLIPSE`	`8`
`public static final byte`	`HEXAGON`	`9`
`public static final byte`	`OCTAGON`	`10`
`public static final byte`	`PARALLELOGRAM`	`6`
`public static final byte`	`RECT`	`0`
`public static final byte`	`RECT_3D`	`2`
`public static final byte`	`ROUND_RECT`	`1`
`public static final byte`	`TRAPEZOID`	`3`
`public static final byte`	`TRAPEZOID_2`	`4`
`public static final byte`	`TRIANGLE`	`5`

cytoscape.visual.calculators.AbstractCalculator
`public static final String`	`ID`	`"ID"`

cytoscape.visual.mappings.ObjectMapping
`public static final byte`	`EDGE_MAPPING`	`0`
`public static final byte`	`NODE_MAPPING`	`1`

cytoscape.visual.mappings.continuous.ContinuousUI
`public static final int`	`EQUAL`	`1`
`public static final int`	`GREATER`	`2`
`public static final int`	`LESSER`	`0`

cytoscape.visual.ui.ValueDisplayer
`public static final byte`	`ARROW`	`2`
`public static final byte`	`COLOR`	`0`
`public static final byte`	`DOUBLE`	`4`
`public static final byte`	`FONT`	`7`
`public static final byte`	`INT`	`6`
`public static final byte`	`LINETYPE`	`1`
`public static final byte`	`NODESHAPE`	`5`
`public static final byte`	`STRING`	`3`

cytoscape.visual.ui.VizMapUI
`public static final byte`	`EDGE_COLOR`	`8`
`public static final byte`	`EDGE_FONT_FACE`	`124`
`public static final byte`	`EDGE_FONT_SIZE`	`125`
`public static final byte`	`EDGE_LABEL`	`12`
`public static final byte`	`EDGE_LABEL_FONT`	`13`
`public static final byte`	`EDGE_LINETYPE`	`9`
`public static final byte`	`EDGE_SRCARROW`	`10`
`public static final byte`	`EDGE_TGTARROW`	`11`
`public static final byte`	`EDGE_TOOLTIP`	`15`
`public static final byte`	`NODE_BORDER_COLOR`	`1`
`public static final byte`	`NODE_COLOR`	`0`
`public static final byte`	`NODE_FONT_FACE`	`122`
`public static final byte`	`NODE_FONT_SIZE`	`123`
`public static final byte`	`NODE_HEIGHT`	`126`
`public static final byte`	`NODE_LABEL`	`5`
`public static final byte`	`NODE_LABEL_COLOR`	`7`
`public static final byte`	`NODE_LABEL_FONT`	`6`
`public static final byte`	`NODE_LINETYPE`	`2`
`public static final byte`	`NODE_SHAPE`	`3`
`public static final byte`	`NODE_SIZE`	`4`
`public static final byte`	`NODE_TOOLTIP`	`14`
`public static final byte`	`NODE_WIDTH`	`127`

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